| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2139702 = | NA (NA) | 14 (0.110) | 9/164 | NT | NA | noncoding (1/37 nt) | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 2139735 = | NA (NA) | noncoding (34/37 nt) | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP146 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2139806‑2139702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG > NC_000913/2139735‑2139833 GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCAT > 1:1178377/1‑100GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCAT > 2:3275422/1‑100GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCAT > 2:2188949/1‑100GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCAT < 1:2734880/100‑1 TCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCA < 2:1952397/99‑1 tctGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG < 1:1649297/97‑1 caCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG < 1:3547864/98‑1 CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG > 2:63607/1‑100 CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG > 1:3410161/1‑100 CCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGG < 1:1736787/100‑1 CCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC < 2:3924500/100‑1 GTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGaga > 2:1649288/1‑97 GGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCGTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCA > 1:3242218/1‑100 CTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCA > 1:933162/1‑100 AGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATATTATCCAGCAACTTCTTCACATCTTTGCCATTAC > 2:732029/1‑100 GGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACG > 2:3745966/1‑100 GGCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACG > 1:1814110/1‑100 GCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGG > 1:3216700/1‑100 GCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGG > 1:1538084/1‑100 GCCTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGG > 1:2757585/1‑100 CTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGA > 1:3805875/1‑100 CTGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGA > 1:2837212/1‑100 TGATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAA > 1:4607/1‑100 GATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAAT > 2:3921770/1‑100 GATAAGACGCGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAAT > 2:3866319/1‑100 CGTAAAGCGTCGCATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCC < 1:3745994/100‑1 ATCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTC > 2:828356/1‑100 TCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCA < 2:3644032/100‑1 TCAGGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCA < 2:3643367/100‑1 GGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTC < 1:3105974/100‑1 GGCCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTC > 1:1120671/1‑100 CCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG < 1:3924530/100‑1 CCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG > 2:603004/1‑100 CCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG > 1:354554/1‑100 GATTCCCGTAATGGCAAAGATGTGAAGAAGTTGCTGGAGAAGATGTAGGTTACCAGGTGACCAGTCCTGTAGGCCTGATAAGACGCGTAAAGCGTCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2139806‑2139702‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcCTACAGGACTGGTCACCTGGTAACCTACATCTTCTCCAGCAACTTCTTCACATCTTTGCCATTACGGGAATCTTTATTCCGCTCGGCCCAGTCATTCAG > NC_000913/2139735‑2139833 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |