New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3493765	NA (NA)	14 (0.110)	6/162	NT	NA	noncoding (8/26 nt)	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 3493775	NA (NA)					noncoding (18/26 nt)	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP248 (repetitive extragenic palindromic) element; contains 1 REP sequences

AAACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3493659‑3493765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggacgACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAAGAC  <  NC_000913/3493775‑3493678                                                                                                                                                                                                               AAACGGTCTGTACGCTGTCGGCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATG                                                                                                           >  1:3713934/1‑100   ACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCC                                                                                                         <  1:1272594/100‑1   ACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCC                                                                                                         <  1:3601779/100‑1   ACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCC                                                                                                         >  1:217039/1‑100       TCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGAC                                                                                                     <  1:3449710/100‑1       TCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGAC                                                                                                     <  1:3363980/100‑1       TCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGAC                                                                                                     >  1:32350/1‑100       TCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGAC                                                                                                     >  1:2410202/1‑100       TCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGAC                                                                                                     <  1:1536268/100‑1        CTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACG                                                                                                    >  2:1850183/1‑100                         TGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  1:169263/100‑1                         TGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  1:2756483/100‑1                         TGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  2:1988171/100‑1                         TGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  1:417983/100‑1                         TGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  1:512255/100‑1                         TGTGATGTGCTTCCTGTTAAGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAAGTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  2:1878868/100‑1                          GTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGC                                                                                  <  1:832236/100‑1                           TGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGG                                                                                   <  2:2313256/98‑1                            GATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGCAT                                                                                <  1:11110/100‑1                            GATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGCAT                                                                                <  1:702351/100‑1                             ATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGCATG                                                                               <  1:1545274/100‑1                             ATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGCATG                                                                               <  2:3873913/100‑1                                                            ACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCT                                                <  1:145164/100‑1                                                                     ATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGAC                                       <  1:1653253/100‑1                                                                                                    GCCGGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCAC        <  1:3206265/100‑1                                                                                                    GCCGGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCAC        >  1:2827462/1‑100                                                                                                    GCCGGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCAC        >  1:2480381/1‑100                                                                                                     CCGGCCGACGATAGTGCCGTCCGGCATGAGCCATTACTGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTCACAGGAAGCACATCAC        >  2:1775592/1‑99                                                                                                     CCGGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACA       >  2:535882/1‑100                                                                                                       GGACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAA     >  1:1308256/1‑100                                                                                                        GACGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAAG    >  2:2260547/1‑100                                                                                                          CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGCAGCACATCACCAAGAC  >  1:1303101/1‑100                                                                                                          CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAAGAC  >  2:241165/1‑100                                                                                                          CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAAGAC  >  2:243893/1‑100                                                                                                          CGACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAAGAC  <  2:3859017/100‑1                                                                                                                                                                                                               AAACGGTCTGTACGCTGTCGTCTTTGTGATGTGCTTCCTGTTAGGTTTCGTCAGCCGTCACCGTCAGCATAACACCCTGACCTCTCATTAATTGCTCATGCCGGACG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3493659‑3493765 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggacgACGATAGTGCCGTCCGGCATGAGCAATTAATGAGAGGTCAGGGTGTTATGCTGACGGTGACGGCTGACGAAACCTAACAGGAAGCACATCACAAAGAC  <  NC_000913/3493775‑3493678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.