BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	216059 =	NA (NA)	26 (0.200)	9/164	NT	17.4%	noncoding (33/111 nt)	RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
*	?	NC_000913	216089 =	123 (0.950)	26 (0.200)	9/164	NT	17.4%	noncoding (63/111 nt)	RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP16 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 208 total aligned reads displayed.

GCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGG  >  NC_000913/215960‑216158

gCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAgg                                                                                                     <  2:209554/100‑1 (MQ=255)

acccggtgataaagtaaatgccttatccgccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattg                                                                                                     >  2:517555‑M1/100‑100 (MQ=255)

 cAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGc                                                                                                    <  1:3517449/100‑1 (MQ=255)

   gtagtTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCg                                                                                                  <  2:665529/100‑1 (MQ=255)

   cggtgataaagtaaatgccttatccgccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCg                                                                                                  >  1:280215‑M1/97‑100 (MQ=255)

    tagtTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCgg                                                                                                 <  2:1125559/100‑1 (MQ=255)

     gtgataaagtaaatgccttatccgccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGa                                                                                                <  1:3935012‑M1/6‑1 (MQ=255)

      gtTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGCAGGATATATTTCAACCTTTTGAATTTGCACGTTTTTTGTAGGCCGGAt                                                                                               >  2:3105358/1‑100 (MQ=255)

      gtTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGTAt                                                                                               >  2:1444174/1‑100 (MQ=255)

       tttGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGAtn                                                                                              <  2:3769527/100‑2 (MQ=255)

        ttGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATaa                                                                                             >  2:3506129/1‑100 (MQ=255)

        ttGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATaa                                                                                             >  1:124374/1‑100 (MQ=255)

         tGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAg                                                                                            >  2:2420286/1‑100 (MQ=255)

           gggCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGc                                                                                          <  1:270601/100‑1 (MQ=255)

           gggCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGc                                                                                          <  1:3822685/100‑1 (MQ=255)

           gggCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGc                                                                                          >  2:2027375/1‑100 (MQ=255)

            ggCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCg                                                                                         >  1:2308229/1‑100 (MQ=255)

            agtaaatgccttatccgccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCg                                                                                         <  1:1007823‑M1/13‑1 (MQ=255)

             gCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGt                                                                                        <  1:3809295/100‑1 (MQ=255)

              cAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTTTTTTCTGGATAAGGCGtt                                                                                       >  2:2469418/1‑100 (MQ=255)

              cAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGtt                                                                                       <  2:1822479/100‑1 (MQ=255)

              cAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGtt                                                                                       <  1:3034498/100‑1 (MQ=255)

                    cccGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                 >  1:1875003/1‑100 (MQ=255)

                    cccGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                 <  2:1015021/100‑1 (MQ=255)

                    cccGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                 >  1:1271400/1‑100 (MQ=255)

                     ccGTTTTGAGACATAAACAAACGCAAAAAAGGCCAGAAGGATATATTTCAACATTTTTAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgcc                                                                                 <  2:2997861/99‑1 (MQ=38)

                     ccGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                                >  1:1707966/1‑100 (MQ=255)

                     ccGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                                <  1:683698/100‑1 (MQ=255)

                      cGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATGCGGCGTAAAcgcctt                                                                               <  2:3549150/100‑3 (MQ=38)

                      cGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgccgc                                                                               <  1:2285330/100‑1 (MQ=255)

                      cGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTAcgccg                                                                                <  2:821691/99‑1 (MQ=255)

                       gTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                              <  1:949699/100‑1 (MQ=255)

                       gTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCa                                                                              >  1:3930169/1‑100 (MQ=255)

                         cTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                                            >  1:3328132/1‑100 (MQ=255)

                          ttGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                                           >  1:1336022/1‑100 (MQ=255)

                            gccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                         >  1:755029‑M1/72‑100 (MQ=255)

                            gccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCgg                                                                         >  1:3265057‑M1/72‑100 (MQ=255)

                             ccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                        >  2:91936‑M1/71‑100 (MQ=255)

                             ccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                        >  1:1048921‑M1/71‑100 (MQ=255)

                             ccttaaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                        >  1:2091956‑M1/71‑100 (MQ=255)

                             agaCAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                        <  1:3506154/100‑1 (MQ=255)

                              gaCAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                       >  1:2200780/1‑100 (MQ=255)

                              gaCAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACG‑TTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                      >  2:3821598/1‑100 (MQ=255)

                                taaggtatgaggggggttgtaggcatgataagccgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                                                     >  1:452867‑M1/68‑100 (MQ=255)

                                taaggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGCAAt                                                                     >  2:2214735‑M1/68‑100 (MQ=255)

                                 aGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATg                                                                    <  2:124374/100‑1 (MQ=255)

                                  gAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTTGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                   >  2:1391897/1‑100 (MQ=255)

                                  gAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATgg                                                                   <  1:235158/100‑1 (MQ=255)

                                   ggtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATccggcagatcg                                                                  <  1:1564088‑M1/36‑6 (MQ=255)

                                   aaacaaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGt                                                                  <  1:1791825/100‑1 (MQ=255)

                                    gtatgaggggggttgtaggcatgataagacgcgccagcgtcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTg                                                                 >  1:1415632‑M1/64‑100 (MQ=255)

                                       aaacGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTc                                                              >  1:3211124/1‑100 (MQ=255)

                                         acGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCaa                                                            >  2:1099140/1‑100 (MQ=255)

                                          cGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCaa                                                            <  2:3253484/99‑1 (MQ=255)

                                              aaaCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCt                                                       >  1:2848428/1‑100 (MQ=255)

                                              aaaCAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCt                                                       <  2:3225804/100‑1 (MQ=255)

                                               aaCAGGCTAAAAGGATGTAATTCAACTGTTTAAATTTGCACGTTTTTGTCAAAACGGATAGGGCGTTTAAACCGCTTCCGGTAAGGCTGCTCAACGc                                                         <  2:1630777/97‑1 (MQ=255)

                                                  aGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATg                                                   <  1:3105378/100‑1 (MQ=255)

                                                  aGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATg                                                   <  1:998341/100‑1 (MQ=255)

                                                   ggCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                  >  2:3156426/1‑100 (MQ=255)

                                                   ggCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                  <  2:490491/100‑1 (MQ=255)

                                                   ggCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                  >  2:1283075/1‑100 (MQ=255)

                                                   ggCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGc                                                  >  1:581721/1‑100 (MQ=255)

                                                   gcccAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAAGCAGGATAACGCGTTGACGCCGCACCCTGCAATCGCGCTCAACGCCt                                                       >  2:3458321/3‑95 (MQ=255)

                                                          aGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTg                                           >  2:2806482/1‑100 (MQ=255)

                                                                 atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTc                                    >  2:3262518/1‑100 (MQ=255)

                                                                 atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTc                                    >  1:2619286/1‑100 (MQ=255)

                                                                 atTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCAGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTc                                    >  2:3179522/1‑100 (MQ=255)

                                                                  tttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCt                                   <  2:3920948/100‑1 (MQ=255)

                                                                  tttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCt                                   <  1:2288486/100‑1 (MQ=255)

                                                                  tttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCt                                   <  1:1630663/100‑1 (MQ=255)

                                                                   ttCAACATTTTGAATTTGCGCGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCtt                                  >  1:2567996/1‑100 (MQ=255)

                                                                   ttCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCtt                                  <  1:2930274/100‑1 (MQ=255)

                                                                     naaCATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACACTGGCGCGTCTTAt                                >  1:1525102/2‑100 (MQ=255)

                                                                     cAACTTTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATCGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTa                                 <  2:2887289/99‑1 (MQ=255)

                                                                     cAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTAt                                <  2:3866089/100‑1 (MQ=255)

                                                                        cATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCAt                             >  2:1761138/1‑100 (MQ=255)

                                                                         aTTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATg                            <  2:2911997/100‑1 (MQ=255)

                                                                         aTTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATg                            >  2:1698589/1‑100 (MQ=255)

                                                                           tttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                          <  1:810265/100‑1 (MQ=255)

                                                                           tttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                          <  1:25327/100‑1 (MQ=255)

                                                                           tttGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTGTACGCCGCATCCGTCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATTcc                          <  2:1727820/100‑1 (MQ=255)

                                                                           tcgcatcaggcgttgagcaccattGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGcc                          >  1:2761579‑M1/25‑100 (MQ=255)

                                                                             tGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa                        <  2:731062/100‑1 (MQ=255)

                                                                             tGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTa                        <  2:1947210/100‑1 (MQ=255)

                                                                                    gCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAcccc                 >  1:2620060/1‑100 (MQ=255)

                                                                                      aCGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGCCAATCGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAAcccccc               <  2:3284089/100‑1 (MQ=255)

                                                                                       cGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCt              <  2:768149/100‑1 (MQ=255)

                                                                                        gTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTc             <  2:2564007/100‑1 (MQ=255)

                                                                                        gTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTc             >  1:2006979/1‑100 (MQ=255)

                                                                                            tttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATAc         >  2:1490001/1‑100 (MQ=255)

                                                                                             ttGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATAcc        <  1:3410087/100‑1 (MQ=255)

                                                                                                tAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTa     <  1:2456226/100‑1 (MQ=255)

                                                                                                attgCCGGATGAGGAGTAAACGCATTATCCGGCAATGGTGCTCGGCGCCTGATGCGACGATGGCGCGAGTTATGCTACATACACCCACGCTCATAcc        >  2:3201675/4‑97 (MQ=255)

                                                                                                attGCCGGATGCGGCGTAAACGCCTTATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTa     <  2:558804‑M1/97‑1 (MQ=255)

                                                                                                 aGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTaa    >  1:1820090/1‑100 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTaa    >  2:3090171/1‑99 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAg   <  2:3144585/100‑1 (MQ=255)

                                                                                                  ggCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAg   >  2:258798/1‑100 (MQ=255)

                                                                                                   GCCGGATGCGGCGTAAACGCCTTATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAgg  <  2:1557576‑M1/100‑1 (MQ=255)

GCAGTAGTTTGGGGCAGTAACCCGTCTTGAGACAGAAACAAACGCAAAACAGGCCAGAAGGATATATTTCAACATTTTGAATTTGCACGTTTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAATGGTGCTCAACGCCTGATGCGACGCTGGCGCGTCTTATCATGCCTACAACCCCCCTCATACCTTAAGG  >  NC_000913/215960‑216158

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.