New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 2729452NA (NA)23 (0.180) 7/158 NT NA intergenic (‑8/+164) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon
?NC_000913 = 2729474 NA (NA)intergenic (‑30/+142) gltW/rrsG tRNA‑Glu/16S ribosomal RNA of rrnG operon

GCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTAT  >  NC_000913/2729403‑2729522
                                                 |                                                                      
gcggTGAAAGGGGGGGGTCGTGGGCCTGGAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTa                       <  2:3497913/96‑1 (MQ=1)
  cgggAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATa                    <  2:470975/97‑1 (MQ=1)
                gttcTGGGTCTCTAGACGAAGGGGACACGAAAATTGCTTATCGCGCTTTGCGGGATATTTTCGTGTAGGGTGAGCATGCATTAATAGAAAGCGCACGGcc      <  2:646131/97‑1 (MQ=1)
                            nagccGAAGGGGACACGAAAATTGCTTATCGCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAACAGACAGCGAACGGCCTTAt  >  2:3915888/5‑92 (MQ=1)
                                                 |                                                                      
GCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTAT  >  NC_000913/2729403‑2729522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.