New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2729452	NA (NA)	23 (0.180)	7/158	NT	NA	intergenic (‑8/+164)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon
	?	NC_000913	= 2729474	NA (NA)					intergenic (‑30/+142)	gltW/rrsG	tRNA‑Glu/16S ribosomal RNA of rrnG operon

GCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCA  >  NC_000913/2729403‑2729572                                                                        |                                                                                                   gcggTGAAAGGGGGGGGTCGTGGGCCTGGAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTa                                                                         <  2:3497913/96‑1 (MQ=1)   cgggAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATa                                                                      <  2:470975/97‑1 (MQ=1)                 gttcTGGGTCTCTAGACGAAGGGGACACGAAAATTGCTTATCGCGCTTTGCGGGATATTTTCGTGTAGGGTGAGCATGCATTAATAGAAAGCGCACGGcc                                                        <  2:646131/97‑1 (MQ=1)                             nagccGAAGGGGACACGAAAATTGCTTATCGCGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAACAGACAGCGAACGGCCTTAt                                                    >  2:3915888/5‑92 (MQ=1)                                                              cgTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTAtt           <  1:96791/100‑1 (MQ=32)                                                               gTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTc          >  2:3423148/1‑100 (MQ=33)                                                                 tGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAc        <  1:489764/100‑1 (MQ=33)                                                                  gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt       >  1:116753/1‑100 (MQ=33)                                                                  gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt       <  2:1913889/100‑1 (MQ=32)                                                                  gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt       <  2:2132591/100‑1 (MQ=33)                                                                  gCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt       >  2:284128/1‑100 (MQ=32)                                                                  gCGTGATATTTTCGTGTAGGGTAAGCTTTCATTAATAGAAAGCTAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACt       >  2:1713130/1‑100 (MQ=16)                                                                    gTGATATTTTCGTGTAGGGTGAGCTTTCATTCATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCTCttt     <  2:463065/100‑1 (MQ=12)                                                                    gTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACTCCTTGCTATTCACttt     >  2:1136615/1‑100 (MQ=17)                                                                       atatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca  <  1:3947214/100‑1 (MQ=38)                                                                       atatTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTtca  <  1:475786/100‑1 (MQ=38)                                                                        |                                                                                                   GCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCACTTTTCA  >  NC_000913/2729403‑2729572

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.