Predicted mutation
evidence seq id position mutation annotation gene description
JC JC NC_000913 1,293,033 IS1 (+) +9 bp intergenic (‑111/‑486) hns ← / → tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 1050545NA (NA)65 (0.830) 44/198 1.0 98.3% noncoding (768/768 nt) IS1 repeat region
?NC_000913 1293033 = 1 (0.010)intergenic (‑111/‑494) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
* ? NC_000913 = 12930411 (0.010)95 (1.210) 72/198 0.0 98.9% intergenic (‑119/‑486) hns/tdk global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase
?NC_000913 = 1979270 NA (NA)noncoding (1/768 nt) IS1 repeat region

CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1050447‑1050545
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAC  >  NC_000913/1293033‑1293130
                                                                                                                                                                                                     
CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCT                                                                                                   <  2:52636/100‑1
  GAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGT                                                                                                 >  2:39474/1‑100
        GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCC                                                                                           <  1:929550/100‑1
        GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCC                                                                                           <  1:235058/100‑1
        GCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCACTACCTGTGCCGCC                                                                                           <  2:1246182/100‑1
          TGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAA                                                                                         <  2:1051882/100‑1
            TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATA                                                                                       <  2:845844/100‑1
            TCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATA                                                                                       <  2:1711792/100‑1
             CGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAA                                                                                      <  1:1720441/100‑1
               TTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAAT                                                                                    <  2:1785242/100‑1
                  TCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATC                                                                                 >  2:1794633/1‑100
                       ATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTC                                                                            <  1:1930840/100‑1
                         CGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCAT                                                                          >  2:1520991/1‑100
                         CGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCAT                                                                          >  2:1061586/1‑100
                            cttccgatctTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAA                                                                       <  1:842400/90‑1
                            cttccgatctTGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAA                                                                       <  1:842433/90‑1
                            TGGAGCTGCATGACAAAGTCATCGGGAATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAA                                                                       >  2:245907/1‑100
                             GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAA                                                                      <  1:73394/100‑1
                             GGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAA                                                                      <  2:1951399/100‑1
                              GAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAAT                                                                     >  2:283332/1‑100
                               AGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATT                                                                    >  2:604760/1‑100
                                 CTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAG                                                                  <  2:1143970/100‑1
                                  TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGC                                                                 <  2:1596915/100‑1
                                  TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGC                                                                 >  1:1690016/1‑100
                                  TGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGC                                                                 <  1:247837/100‑1
                                   GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCa                                                                >  2:247838/1‑99
                                   GCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCC                                                                <  1:1871592/100‑1
                                     ATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAG                                                              >  2:1641114/1‑100
                                      TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAAgatcggaag                                                             >  2:842431/1‑91
                                      TGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAAgatcggaag                                                             >  2:842398/1‑91
                                        ACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAA                                                           <  2:1483852/100‑1
                                            AGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGAC                                                       >  2:270848/1‑100
                                              TCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGC                                                     >  1:943267/1‑100
                                               CATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCG                                                    <  1:1794644/100‑1
                                                ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGG                                                   <  1:604760/100‑1
                                                ATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGG                                                   <  2:1336033/100‑1
                                                ATCGGGCATTATCTGAACATAAAACACTATAAACAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGG                                                   >  2:1328293/1‑100
                                                 TCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGC                                                  <  2:300261/100‑1
                                                  cttccgatcTCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCA                                                 <  2:477396/91‑1
                                                   GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAT                                                >  1:782951/1‑100
                                                   GGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAT                                                >  2:817823/1‑100
                                                    GGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATA                                               >  2:558977/1‑100
                                                     GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATAT                                              >  2:591630/1‑100
                                                     GCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCAGTACCTGTGCCGCCAATAAACATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATAT                                              >  2:1100647/1‑100
                                                         TATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCC                                          <  1:2014600/100‑1
                                                          ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCC                                         >  1:643363/1‑100
                                                          ATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCC                                         >  2:257330/1‑100
                                                            CTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCAagatcggaag                                       >  1:477395/1‑90
                                                             TGAACATAAAACACTATCAAAAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTAT                                      >  2:1235860/1‑100
                                                               acCATAAAACACTATCAATAATTTTGATTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATT                                     <  2:1554084/97‑1
                                                               AACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTT                                    <  1:39473/100‑1
                                                               AACATAAAACACTATCAATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTT                                    <  2:388328/100‑1
                                                                          CTATCAATAAGTTGGAGTCATTACCAGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGAT                         >  2:223433/1‑100
                                                                                ATAAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCA                   <  2:943265/100‑1
                                                                                  AAGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGC                 <  1:1818545/100‑1
                                                                                   nGTTGGAGTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTAGCAGCA                >  1:36953/2‑100
                                                                                          GTCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGG         >  1:449727/1‑100
                                                                                           TCATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGT        <  1:1100652/100‑1
                                                                                            CATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTT       >  2:727224/1‑100
                                                                                            CATTACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCAAGTGAGGTT       >  2:179388/1‑100
                                                                                               TACCTATGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGTCATATAGCCCTATTTACACCGATGATTTCGCTGCACGTGAGGTTAAA    <  1:132814/100‑1
                                                                                                ACCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAA   >  2:132815/1‑100
                                                                                                 CCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAC  <  2:219998/100‑1
                                                                                                 CCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAC  <  2:1859339/100‑1
                                                                                                 CCTGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAC  >  2:1056816/1‑100
                                                                                                                                                                                                     
CGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1050447‑1050545
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTGCCGCCAATAAATATCTTTTCATAAAATTAGCCAGAAAAGACGCGGCATATAGCCCTATTTACACCGATGATTTCGCAGCACGTGAGGTTAAAAC  >  NC_000913/1293033‑1293130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.