New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4587878	NA (NA)	19 (0.160)	11/162	NT	NA	noncoding (7/27 nt)	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4587891	NA (NA)					noncoding (20/27 nt)	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP348 (repetitive extragenic palindromic) element; contains 1 REP sequences

ACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587773‑4587878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG  <  NC_000913/4587891‑4587794                                                                                                                                                                                                              ACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGG                                                                                                          >  2:1178361/1‑100  CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGC                                                                                                         >  2:965640/1‑100  CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGC                                                                                                         <  2:2085007/100‑1  CGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGATGCCGATAATGGATATGGACTCTTTTGAGTGAAATATCACGC                                                                                                         >  2:2722032/1‑100   GCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCC                                                                                                        <  1:1263189/100‑1   GCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGCTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCC                                                                                                        >  1:3470911/1‑100      TGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGA                                                                                                     >  1:2384693/1‑100      TGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGA                                                                                                     >  1:3295580/1‑100      TGGTGCACGTAATGGTCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAGCTGGATAGGGACTATTTTGAGTGAAATATCAGGCC                                                                                                        <  2:3050735/97‑1       GGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT                                                                                                    >  1:3167927/1‑100                           ACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGC                                                                                <  2:2606166/100‑1                            CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGTCGGATAAGGCGCAGCCGCATCCGGCC                                                                               <  1:2219593/100‑1                            CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCC                                                                               <  1:1774644/100‑1                            CGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCC                                                                               <  2:1504144/100‑1                             atctTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                              <  1:2931922/96‑1                             atctTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                              <  1:2929987/96‑1                             GAAGTAGGGGTTTCTTCACGTTTGTTGAATGTGCCGAAACTGGATATGGACTATTTTGAGTCAAATATCAGGCCGGATAAGGCGCATCCGCATCCGGCCT                                                                              <  2:2243984/100‑1                             GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                              <  2:3467748/100‑1                             GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                              <  1:499424/100‑1                             GAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCT                                                                              <  1:2533749/100‑1                               AGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGA                                                                            <  2:371077/100‑1                                GTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGAT                                                                           <  1:234065/100‑1                                 TAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTagat                                                                          >  2:2931899/1‑96                                 TAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTagat                                                                          >  2:2929964/1‑96                                  AGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATAT                                                                         <  2:1927687/100‑1                                     GGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTC                                                                      <  1:2711714/100‑1                                      GTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCA                                                                     <  1:3248967/100‑1                                        TTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACT                                                                   <  1:827489/100‑1                                             CACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAA                                                              <  1:1250973/100‑1                                                                                                   GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG        >  1:1868965/1‑100                                                                                                   GGCCGGATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCG        >  2:1266441/1‑100                                                                                                        GATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTC   <  1:2409610/100‑1                                                                                                        GATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTC   <  2:3614855/100‑1                                                                                                         ATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG  <  1:3023534/100‑1                                                                                                         ATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG  <  2:184780/100‑1                                                                                                         ATAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG  >  1:321661/1‑100                                                                                                                                                                                                              ACGCCTGGTGCACTTAATGATCGAAAACGAAGTAGGGGTTTCTTCACGTTTGTTGAAGGTGCCGAAACTGGATATGGACTATTTTGAGTGAAATATCAGGCCGGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4587773‑4587878 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggccggatAAGGCGCAGCCGCATCCGGCCTGATATTTCACTCAAAATAGTCCATATCCAGTTTCGGCACCTTCAACAAACGTGAAGAAACCCCTACTTCGTTTTCG  <  NC_000913/4587891‑4587794

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.