| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4201782 = | 81 (0.940) | 10 (0.140) | 9/164 | 8.3 | 13.4% | intergenic (‑94/‑144) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR |
| ? | NC_000913 | 4201828 = | 62 (0.870) | intergenic (‑140/‑98) | zraP/zraS | Zn‑dependent periplasmic chaperone/sensory histidine kinase in two‑component regulatory system with ZraR | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
GACAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4201897‑4201782‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagtcatttttactcATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAGA > NC_000913/4201828‑4201926 GACAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGG < 1:1387700/100‑1GACAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGG > 1:70641/1‑100 CAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCG > 2:647411/1‑100 CAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCG < 2:1465997/100‑1 CAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCG < 1:490969/100‑1 CAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCG > 1:1960034/1‑100 GCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAG < 2:1845847/100‑1 GCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGT‑AAAATGACTCGCTACCCGCAGCAGGCGAGT > 2:895056/1‑100 CAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGT > 1:1166353/1‑100 ATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTT < 1:1001235/100‑1 ATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTT > 1:1325403/1‑100 TCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTT > 2:1806296/1‑100 CATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTT < 2:2207346/100‑1 ATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTA > 2:1998820/1‑100 TGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTAC < 1:1895306/100‑1 GCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACT < 2:2070960/100‑1 CCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTC < 2:1731396/100‑1 ATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACT > 1:1269708/1‑100 TACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTT > 1:655977/1‑100 GAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGG > 1:1909602/1‑100 AAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATG > 2:14587/1‑100 AATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATT > 1:1915279/1‑100 AATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATT < 1:14587/100‑1 AATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATT > 2:1730189/1‑100 ATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTT > 2:1678218/1‑100 tCTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTG < 2:535662/99‑1 CTCGCTACCCGCAGCAGGCGAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGa > 1:535661/1‑99 GAGTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCA > 2:1659289/1‑100 GTCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGGATGATTTCTGCTGTCAGAAAGGGATGAGCAGG < 1:2187276/100‑1 tcttccgatCTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGC < 1:29657/91‑1 TCATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGC < 2:1001233/100‑1 CATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCA < 1:1847042/100‑1 ATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCn < 2:512696/99‑2 ATTTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAA > 1:2097838/1‑100 TTTTACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAG > 1:1650471/1‑100 TACTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAG < 2:1269705/100‑1 CTCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAA > 1:1219492/1‑100 TCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAG < 2:674428/100‑1 TCATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAG < 2:779221/100‑1 CATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAgatcggaaga > 2:29657/1‑90 CATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAGA < 2:1267359/100‑1 GACAGCAGAAATCATGCCATCTTTTATCAGCGCTTACCCTGCGCTGTAACACAAAGGCTTAAGTTTCAATGAGTAAAAATGACTCGCTACCCGCAGCAGGCGAGTCATTTTTACTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4201897‑4201782‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgagtcatttttactcATTGAAACTTAAGCCTTTGTGTTACAGCGCAGGGTAAGCGCTGATAAAAGATGGCATGATTTCTGCTGTCAGAAAGGGATGAGCAGGCAAAGAAGAAGA > NC_000913/4201828‑4201926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |