| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1069018 = | 115 (0.730) | 25 (0.170) | 12/164 | NT | 20.1% | coding (822/1329 nt) | rutG | pyrimidine permease |
| ? | NC_000913 | 1069048 = | 93 (0.640) | coding (792/1329 nt) | rutG | pyrimidine permease | |||||
TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1069123‑1069018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgaccTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGC > NC_000913/1069048‑1069146 TTCCACTCCTGCTTTTAATGGTCGGGTAATGATGCTGATTGCGGCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:429602/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:3629508/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:957245/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:142150/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:2780095/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:957640/100‑1TTCCACTCCTGCTTTTAATGGTCAGGCAACGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCTGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGG < 1:2650473/100‑1 TCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGA < 1:257753/100‑1 CCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGAT < 1:281138/100‑1 CCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGAT < 2:1478013/100‑1 CACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATG > 1:2251625/1‑100 CACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATG < 2:673041/100‑1 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGTTCATCTCAAGGCAGTCGCCGGGATGAC < 2:1520176/100‑1 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGAC > 1:1915001/1‑100 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGAC > 2:157287/1‑100 CTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGAC > 1:3205796/1‑100 TCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC > 2:1800812/1‑100 TCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC < 2:4176718/100‑1 CGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCAT > 1:1084537/1‑100 GGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATT > 1:3653358/1‑100 GAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTA > 2:1599745/1‑100 AACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAA > 2:3915548/1‑100 AACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAA > 2:1053544/1‑100 ACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAG > 2:2092653/1‑100 ACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAG > 1:2250448/1‑100 CTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGC > 2:1741543/1‑100 CTTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACAAGAATCACCGCCACGGGCGCGATCAGCATCATTGCATGACCATTAAAAG > 1:1064793/1‑99 TTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGCCCATTAAAAGCA > 2:2383362/1‑100 TTAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCATGACCATTAAAAGCA > 2:4338133/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 1:3364700/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 1:1166656/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 1:3505881/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 2:3119218/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 2:1564782/1‑100 TAGGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAG > 2:916083/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 2:276016/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 1:3556131/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 2:1962130/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 1:1179481/1‑100 GGTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGA > 2:1456840/1‑100 GTCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAG > 1:1905138/1‑100 TCATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAG > 2:2469394/1‑99 ATCTCAAGGCAGTCGCCGGGATGACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGG > 1:3633645/1‑100 GACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCA < 2:957249/100‑1 GACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCA < 2:957644/100‑1 ACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAG < 2:3266719/100‑1 ACCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAG < 1:3909143/100‑1 ACCGAAGTTTTCCGCCACCAGAATCACCGCCACAGGCGGAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAG < 1:3570407/100‑1 CCTAAGTTTTCCGCCACCAGCATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGG > 1:2688048/1‑100 CCTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGG > 1:1682818/1‑100 CTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGC > 2:1573593/1‑100 TTCCACTCCTGCTTTTAATGGTCAGGCAATGATGCTGATTGCGCCCGTGGCGGTGATTCTGGTGGCGGAAAACTTAGGTCATCTCAAGGCAGTCGCCGGGATGACC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/1069123‑1069018‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatgaccTAAGTTTTCCGCCACCAGAATCACCGCCACGGGCGCAATCAGCATCATTGCCTGACCATTAAAAGCAGGAGTGGAAAAATGTGGCAGACCGAACCAGGC > NC_000913/1069048‑1069146 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |