New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1190585	NA (NA)	5 (0.030)	4/166	NT	NA	noncoding (6/23 nt)	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 1190596	NA (NA)					noncoding (17/23 nt)	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP106 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1190481‑1190585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaTGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCATAAC  <  NC_000913/1190596‑1190498                                                                                                                                                                                                              TGTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGG                                                                                                          >  2:111676/1‑100  GTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATACACGAGCGGGGAGGGGGGGTAAAGTGAAAAAATAACAAGCGGATACTCTTAATAAGCAGG                                                                                                          >  1:3076706/1‑99  GTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGC                                                                                                         >  2:1597662/1‑100  GTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGC                                                                                                         >  1:1586287/1‑100   TAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCC                                                                                                        <  2:2907226/100‑1    AACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCG                                                                                                       >  2:4057337/1‑100     ACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAACAAGCGGATAATCTTAATAAGCAGGCCG                                                                                                       >  1:762089/1‑99      CGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGA                                                                                                     >  1:1068548/1‑100      CGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGA                                                                                                     >  1:1122817/1‑100       gaGATTATGTGGTTATGGGGGTAAACAGTAAATAATCCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGG                                                                                                      <  1:919890/96‑1         GATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGATag                                                                                                  >  1:1659907/1‑98                          GGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGATGGCGATGCTGTCCGGCCTG                                                                                 <  1:155975/100‑1                          GGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGATGGCGATGCTGTCCGGCC                                                                                   <  1:567362/98‑1                           GTAAACATTAAATAAACCAGCTGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGATGGCGATGCTGTCCGGCCTGC                                                                                <  1:133060/100‑1                             AAACATTAAAAAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGATGGCGATGCTGTCCGGCCTGC                                                                                <  1:2950049/98‑1                               ACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGATGGCGATGCTGTCCGGCCTGCTTAT                                                                            <  1:1065315/100‑1                                                                                                    GCCGGATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCC        >  1:1583926/1‑99                                                                                                     CCGGATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCC       <  2:2679126/99‑1                                                                                                     CCGGATGGCGATGCGGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTGCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCA      <  1:1253807/100‑1                                                                                                      CGGATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCAT     <  1:741391/100‑1                                                                                                      CGGATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCAT     <  2:3203006/100‑1                                                                                                       GGATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCATA    <  1:648483/100‑1                                                                                                       GGATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCATA    <  2:1651523/100‑1                                                                                                        GATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCATAA   <  2:3724650/100‑1                                                                                                         ATGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCATAAC  <  1:282550/100‑1                                                                                                                                                                                                              TGTAACGCGATTATGTGGTTATGGGGGTAAACATTAAATAAACCAGCGGGGAGGGGAGGTAAAGTGAAAAAATAAAAAGCGGATAATCTTAATAAGCAGGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1190481‑1190585 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaTGGCGATGCTGTCCGGCCTGCTTATTAAGATTATCCGCTTTTTATTTTTTCACTTTACCTCCCCTCCCCGCTGGTTTATTTAATGTTTACCCCCATAAC  <  NC_000913/1190596‑1190498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.