| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2470054 = | 168 (1.060) | 29 (0.200) | 13/164 | NT | 16.0% | coding (924/1332 nt) | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage |
| ? | NC_000913 | 2470086 = | 149 (1.020) | coding (956/1332 nt) | gtrS | serotype‑specific glucosyl transferase, CPS‑53 (KpLE1) prophage | |||||
TATGTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2470159‑2470054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtgTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATAAAAG > NC_000913/2470086‑2470184 TATGTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAG < 2:3870389/100‑1TATGTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAG < 2:2816256/100‑1 ATGTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGA < 1:429366/100‑1 GTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGTAGTTTGAAGATG > 1:3245576/1‑100 GTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATG < 1:2125337/100‑1 TTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGG < 2:677731/100‑1 TTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGG < 2:3387574/100‑1 TTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGG > 1:2610154/1‑100 TTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGT < 1:4257426/100‑1 TTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGT < 2:4104735/100‑1 TGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTTAGACATCACACCATCATCAAATGGAAGTTTGAAGATGG < 2:253839/98‑1 GAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATA > 2:3543102/1‑100 TACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTAAGTATAAAGAAAATTATATCCATGTATATATAAAACTAAACATAtt > 1:1392163/1‑98 CTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATAT > 2:1375036/1‑100 GACATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCAATGTATATAAAAAACTACACGAAATATATGG > 1:1819691/1‑100 ACATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGA > 1:1937135/1‑100 ACATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGAAGTCTCAGTATAAAGAAAATGATTTCCATGTATATAAAAAACTACACGTAATATATGGA > 1:2400060/1‑100 CATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAG > 2:1029911/1‑100 CATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGA > 1:1663779/1‑99 ATCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTAAGTATAAAGAAAATTATTTCCATGTATATAAAAAAATACACGTAATATATGGAGA > 1:104867/1‑100 TCACACCATCATCAAATGGAAGTTTGATGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAA > 1:2292382/1‑100 TCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAA > 1:3276376/1‑100 TCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAA > 2:1362121/1‑100 TCACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAA > 1:1247606/1‑100 CACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAAT > 1:305509/1‑100 CACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAAT > 1:2990783/1‑100 CACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAAT > 2:2837998/1‑100 CACACCATCATCAAAGGGAAGTTTGAAGATGGTGTGATGTCTCAGGATAAAGAAAATAATTTCCATGTATATAAAAAACTACACGTAATATATGGAGA > 1:3685488/1‑98 ACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATC > 2:717810/1‑100 ACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATC > 1:119887/1‑100 ACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATC > 1:3620511/1‑100 ACACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATC > 2:1022304/1‑100 ACCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAA > 2:1889400/1‑100 CCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAA > 2:3516452/1‑100 CCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAA > 2:4248140/1‑100 CCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAA > 2:3783553/1‑100 CCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAA > 2:1065007/1‑100 CCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAA > 2:2166456/1‑100 CCATCATCAAATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTAACATGTATATAAAAAACTACACGTAATATATGGAGAATCAAA > 1:3857346/1‑100 AATGGAAGTTTGAAGATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAAC < 2:1663784/100‑1 tcATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAAC < 2:2271347/98‑1 GATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACA > 2:1981021/1‑100 ATGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACAT < 2:2857469/100‑1 TGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATA > 2:1024380/1‑100 TGGTGTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATA > 2:604845/1‑100 GTGTGATGTCTCAGTATAAAGAAAATTATTTCAATGTATATAAAAAACTACACGTAATATATGGAAAATCAAACATACTAACGACTATTACTAACATAAA < 1:4036964/100‑1 GTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATAAAAG > 2:2543696/1‑100 TATGTTTGATTCTCCATATATTACGTGTAGTTTTTTATATACATGGAAATAATTTTCTTTATACTGAGACATCACACCATCATCAAATGGAAGTTTGAAGATGGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/2470159‑2470054‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gatggtgTGATGTCTCAGTATAAAGAAAATTATTTCCATGTATATAAAAAACTACACGTAATATATGGAGAATCAAACATACTAACGACTATTACTAACATAAAAG > NC_000913/2470086‑2470184 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |