New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	2950598 =	NA (NA)	20 (0.140)	7/158	NT	NA	intergenic (+25/+37)	argA/recD	amino acid N‑acetyltransferase and inactive acetylglutamate kinase/exonuclease V (RecBCD complex), alpha chain
	?	NC_000913	2950615 =	NA (NA)					noncoding (3/14 nt)	REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP207 (repetitive extragenic palindromic) element; contains 1 REP sequences

CAATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATgtcgcatccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2950696‑2950598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  >  NC_000913/2950615‑2950722                                                                                                                                                                                                                 CAATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATG                                                                                                             >  1:3121074/1‑100   ATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTC                                                                                                           >  1:2321718/1‑100    TCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCG                                                                                                          <  2:2181498/100‑1    TCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCG                                                                                                          <  2:1829155/100‑1    TCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCG                                                                                                          <  2:2811561/100‑1    TCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCG                                                                                                          <  2:2321729/100‑1     CGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGC                                                                                                         >  1:1902280/1‑100      GCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCA                                                                                                        >  2:2140481/1‑100      GCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCA                                                                                                        >  2:1510499/1‑100      GCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCA                                                                                                        <  1:2367834/100‑1       CCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCAT                                                                                                       >  2:3449552/1‑100       CCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCAT                                                                                                       <  2:2811450/100‑1        CACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATC                                                                                                      <  1:2609603/100‑1        CACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATC                                                                                                      >  2:2597925/1‑100        CACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGCTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATC                                                                                                      >  2:3879514/1‑100                                                                CGTAATTGCCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCT                                              >  1:1766322/1‑100                                                                 GTAATTGCCGGATGCGACGTGCGAGTGTTACGCATGTCGCATCCGACGATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTC                                             >  2:4141738/1‑100                                                                        CCGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCCGTACGA                                      >  2:487372/1‑100                                                                         CGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAG                                     >  1:3927655/1‑100                                                                         CGGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAG                                     >  2:2602560/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATGCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:2110154/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  2:2298140/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  2:1387668/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:100907/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:2681366/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:3049273/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:3050805/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:3430426/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  1:3071482/1‑100                                                                          GGATGCGACGTACGAGTGTTACGCATGTCGCATCCGACGATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGT                                    >  2:2960715/1‑100                                                                           GATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTG                                   >  2:1571195/1‑100                                                                           GATGCGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTG                                   >  2:2043820/1‑100                                                                           GATGCGACGTACGAGTGTTACGCATGTCGCATCCGACGATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGATCACTGCGCCGCTCAGTACGAGTG                                   >  1:1940176/1‑100                                                                           GATGCGACGTACGAGTGTTACACAGGTCGCATCCGGCAATTCCGTTTATTACCGTGAACTAAACAACGCCGCCAGACCACAGCGCCGCGCAGTGCG                                       >  1:1948100/1‑96                                                                               CGACGTACGAGTGTTACGCATGTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGA                               <  1:2759614/100‑1                                                                                                    ggCGCATCCGGCACTTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT          >  2:2986051/3‑100                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGCACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGC           >  1:1775281/1‑99                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT          <  2:1582105/100‑1                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT          <  1:388661/100‑1                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT          <  2:1268887/100‑1                                                                                                    GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCT          >  2:4247262/1‑100                                                                                                     TCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAAAGCCGCCAGACCACTGCGCCGCTCAGTACGAGAGGCGAGTGCCGCACTTAATATGCGC           >  2:1947717/1‑98                                                                                                        CATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATC      >  2:2196744/1‑100                                                                                                          TCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGG    <  1:1404037/100‑1                                                                                                           CCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCATACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGC   <  1:833780/100‑1                                                                                                            aGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACAAGTGGCGATTGCCGCACTTAATATGCGCTAATCGGCA  >  1:2501590/2‑100                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACACCGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  >  1:571718/1‑100                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  <  2:4223804/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  <  2:561432/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  >  2:3547508/1‑100                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  <  2:2536499/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  <  1:3045377/100‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGG    <  1:1106050/98‑1                                                                                                            CGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGAATGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  >  1:2242261/1‑100                                                                                                                                                                                                                 CAATCGCCACTCGTACTGAGCGGCGCAGTGGTCTGGCGGCGTTGTTTAGTTCACGGGAATAAACGTAATTGCCGGATGCGACGTACGAGTGTTACGCATgtcgcatccg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/2950696‑2950598 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GTCGCATCCGGCAATTACGTTTATTCCCGTGAACTAAACAACGCCGCCAGACCACTGCGCCGCTCAGTACGAGTGGCGATTGCCGCACTTAATATGCGCTCATCGGCA  >  NC_000913/2950615‑2950722

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.