New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3941521	30 (0.190)	19 (0.130)	7/168	NT	40.2%	intergenic (‑194/‑287)	yieP/rrsC	putative transcriptional regulator/16S ribosomal RNA of rrnC operon
	?	NC_000913	= 3941548	NA (NA)					intergenic (‑221/‑260)	yieP/rrsC	putative transcriptional regulator/16S ribosomal RNA of rrnC operon

GGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3941418‑3941521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  <  NC_000913/3941548‑3941450                                                                                                                                                                                                             GGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCAC                                                                                                         >  2:821247/1‑100 GGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCAC                                                                                                         >  2:3838112/1‑100 GGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCAC                                                                                                         >  2:1233500/1‑100  tCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACT                                                                                                        <  2:4263039/99‑1  GCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTTCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACT                                                                                                        >  2:1741781/1‑100  GCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACT                                                                                                        <  1:155446/100‑1  GCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACT                                                                                                        >  2:4093901/1‑100  GCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACT                                                                                                        <  2:3413657/100‑1  GCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACT                                                                                                        >  2:2557047/1‑100   CACATTAACGGGGCTTTTGCTGAAGAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTG                                                                                                       <  2:1793905/100‑1   CACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTa                                                                                                       >  1:4263009/1‑99   CACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTG                                                                                                       >  1:2555145/1‑100   CACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTG                                                                                                       <  1:3677664/100‑1   CACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTG                                                                                                       >  2:684552/1‑100   CACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTG                                                                                                       >  2:590257/1‑100      ATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAATATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACC                                                                                                    <  2:2577090/100‑1                     GCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGC                                                                                     >  1:3662144/1‑100                                     GTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAG                                                                     <  2:1887052/100‑1                                      TCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGT                                                                    <  1:1108453/100‑1                                      TCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGT                                                                    <  2:2771069/100‑1                                       CAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCGGTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTG                                                                   <  1:2317249/100‑1                                       CAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTG                                                                   <  1:3284156/100‑1                                       CAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTG                                                                   <  2:3662166/100‑1                                       CAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTG                                                                   <  2:1074448/100‑1                                       CAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACGGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTG                                                                   <  2:493778/100‑1                                       CAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCAGAATATCTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTG                                                                   <  1:2217089/100‑1                                         GAAAATTATTTTAAATTTCCTCTTGTCAGTCATGAATATCTCCCTATAATGCGCCACCACTTACCCGGCGGCGTGTTTTCCGTTTTTCCGTGTCAGTG                                                                   <  1:3153160/98‑1                                         GAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT                                                                 <  2:397187/100‑1                                         GAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT                                                                 <  1:258375/100‑1                                         GAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT                                                                 <  2:1293198/100‑1                                         GAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGT                                                                 <  1:4039682/100‑1                                           AAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGG                                                               <  1:171334/100‑1                                           AAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGG                                                               <  2:3064573/100‑1                                            AATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGn                                                              <  1:606290/100‑2                                             ATTATTTTAAATGTCCTCTTGTCAGGACGGAATAACTCCCTATAATGCGCCACCACTGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGG                                                                  <  1:3554711/95‑1                                                                                                    CTGACCCGGCGGCGTGTTTGCCGTTTTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTTTTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGAC      <  1:951554/100‑1                                                                                                     TGACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACC     <  2:2139458/100‑1                                                                                                      GACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCG    <  1:1807264/100‑1                                                                                                      GACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCG    >  2:977961/1‑100                                                                                                      GACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCG    >  1:2746422/1‑100                                                                                                      GACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCG    <  2:2823829/100‑1                                                                                                      GACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCG    <  2:2099682/100‑1                                                                                                       ACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGC   <  2:3576610/100‑1                                                                                                       ACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGC   <  1:3235702/100‑1                                                                                                       ACCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTG        >  1:3847304/1‑95                                                                                                       ACCCGGCGGAGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCGTTGTCGGGAGTGATTCCGGCCTGACAAGAGGAAATTTAAAATGGTTTTCTGACCGg   <  2:4382173/100‑2                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCCGTGGTGGCGCATTATAGGGCGTTATTCCGGCCTGACAAGAGGACATCTAAAATAATTTTCTGACCGCG  >  1:3834290/1‑100                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  >  2:3454119/1‑100                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  >  2:3649462/1‑100                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  >  1:1840995/1‑100                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  <  2:2202983/100‑1                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  <  2:1937068/100‑1                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  <  1:516200/100‑1                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  >  2:772649/1‑100                                                                                                        CCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  >  1:1568398/1‑100                                                                                                        CCCGGCGACGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  >  2:2308662/1‑100                                                                                                                                                                                                             GGCACATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3941418‑3941521 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctgacCCGGCGGCGTGTTTGCCGTTGTTCCGTGTCAGTGGTGGCGCATTATAGGGAGTTATTCCGGCCTGACAAGAGGAAATTTAAAATAATTTTCTGACCGCG  <  NC_000913/3941548‑3941450

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.