| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3941521 | 30 (0.190) | 19 (0.130) | 7/168 | NT | 40.2% | intergenic (‑194/‑287) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon |
| ? | NC_000913 | = 3941548 | NA (NA) | intergenic (‑221/‑260) | yieP/rrsC | putative transcriptional regulator/16S ribosomal RNA of rrnC operon | |||||
ATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCG > NC_000913/3941423‑3941620 | aTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAATATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACc < 2:2577090‑M1/100‑2 (MQ=255)aTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGaca < 1:1650445/100‑1 (MQ=255)aTTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGaca < 2:1855852/100‑1 (MQ=255) ttAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGacac < 2:4080301/100‑1 (MQ=255) tAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg > 1:987421/1‑100 (MQ=255) tAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg < 2:1097531/100‑1 (MQ=255) tAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACg > 1:1705049/1‑100 (MQ=255) aaCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACgg > 1:3293167/1‑100 (MQ=255) aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa < 2:4191494/100‑1 (MQ=255) aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa < 2:1971092/100‑1 (MQ=255) aCGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa > 2:221534/1‑100 (MQ=255) cGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaa < 1:1183717/100‑1 (MQ=255) cGGGGCTTTTGCTGAAAAAATACGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACAGGGaa > 1:1223255/1‑100 (MQ=255) ggtgCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaac < 2:2619769/97‑1 (MQ=255) ggggCTTTTGCTGAAAAAATTCGCGGTCACAAAATGATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGa < 1:2965459/98‑1 (MQ=255) gggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca > 2:2815044/1‑100 (MQ=255) gggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaaca < 1:1739817/100‑1 (MQ=255) gggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaac < 1:2239874/99‑1 (MQ=255) ggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaa > 2:2326688/1‑100 (MQ=255) ggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaa > 2:1362393/1‑100 (MQ=255) ggCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaa > 2:1362374/1‑100 (MQ=255) gCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 1:566795/100‑1 (MQ=40) cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGaacaac < 1:780406/99‑1 (MQ=40) cTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACg < 2:382392/100‑1 (MQ=40) ttttGCTGAAAAAATGCGCTGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg < 1:1163194/100‑1 (MQ=255) tttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAGTTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc > 1:2346007/1‑100 (MQ=38) tttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc < 2:2804993/100‑1 (MQ=38) tttGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGc < 2:3206166/100‑1 (MQ=38) aaaaaaaaaaaaaTGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACgg < 1:1974742/92‑1 (MQ=2) ttGCTGAAAAAATGCGCGGTCAGAAAATTATGTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCa < 1:2138532/100‑1 (MQ=25) gCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgc > 1:3662144‑M1/1‑84 (MQ=255) gCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 2:2946635/1‑100 (MQ=33) gCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCaaa > 1:651918/1‑100 (MQ=33) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac < 2:3293183/100‑1 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 2:1987417/1‑100 (MQ=32) cTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 2:4315452/1‑100 (MQ=32) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca < 2:3755661/100‑1 (MQ=31) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca > 2:760403/1‑100 (MQ=31) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAaca > 1:995638/1‑100 (MQ=31) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAac > 2:3446413/1‑99 (MQ=31) tGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTACTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGACAAaca > 1:412078/1‑100 (MQ=9) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 2:616615/1‑100 (MQ=11) gAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAacac > 1:2997107/1‑100 (MQ=11) gTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcag < 2:1887052‑M1/100‑33 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 1:1108453‑M1/100‑34 (MQ=255) tCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagt < 2:2771069‑M1/100‑34 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCGGTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:2317249‑M1/100‑35 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 2:1074448‑M1/100‑35 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:3284156‑M1/100‑35 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 2:3662166‑M1/100‑35 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACGGACccggcggcgtgtttgccgttgttccgtgtcagtg < 2:493778‑M1/100‑35 (MQ=255) cAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCAGAATATCTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtg < 1:2217089‑M1/100‑35 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGTCATGAATATCTCCCTATAATGCGCCACCACTTACccggcggcgtgttttccgtttttccgtgtcagtg < 1:3153160‑M1/98‑35 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggt < 2:1293198‑M1/100‑37 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggt < 1:258375‑M1/100‑37 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggt < 1:4039682‑M1/100‑37 (MQ=255) gAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggt < 2:397187‑M1/100‑37 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 2:3064573‑M1/100‑39 (MQ=255) aaaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtgg < 1:171334‑M1/100‑39 (MQ=255) aaTTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtggtggn < 1:606290‑M1/100‑40 (MQ=255) attattTTAAATGTCCTCTTGTCAGGACGGAATAACTCCCTATAATGCGCCACCACTGACccggcggcgtgtttgccgttgttccgtgtcagtgg < 1:3554711‑M1/95‑36 (MQ=255) cTGACccggcggcgtgtttgccgtttttccgtgtcagtggtggcgcattatagggagtttttccggcctgacaagaggaaatttaaaataattttctgac < 1:951554‑M1/100‑96 (MQ=255) tGACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgacc < 2:2139458‑M1/100‑97 (MQ=255) tGACACGGAACATCGGCAAACAGGCCGGCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGaaa < 1:992310/100‑1 (MQ=2) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 2:977961‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 1:1807264‑M1/100‑98 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 2:2823829‑M1/100‑98 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg > 1:2746422‑M1/1‑3 (MQ=255) gACccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccg < 2:2099682‑M1/100‑98 (MQ=255) gACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAg < 1:2033881/100‑1 (MQ=31) aCccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgc < 2:3576610‑M1/100‑99 (MQ=255) aCccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgc < 1:3235702‑M1/100‑99 (MQ=255) aCccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctg > 1:3847304‑M1/1‑2 (MQ=255) aCccggcggagtgtttgccgttgttccgtgtcagtggtggcgcgttgtcgggagtgattccggcctgacaagaggaaatttaaaatggttttctgaccgg < 2:4382173‑M1/100‑99 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtccgtggtggcgcattatagggcgttattccggcctgacaagaggacatctaaaataattttctgaccgcg > 1:3834290‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:1568398‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 2:1937068‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 2:2202983‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:3649462‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg < 1:516200‑M1/100‑100 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:3454119‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:772649‑M1/1‑1 (MQ=255) cccggcggcgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 1:1840995‑M1/1‑1 (MQ=255) cccggcgacgtgtttgccgttgttccgtgtcagtggtggcgcattatagggagttattccggcctgacaagaggaaatttaaaataattttctgaccgcg > 2:2308662‑M1/1‑1 (MQ=255) cacGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCg < 2:708059/100‑1 (MQ=32) | ATTAACGGGGCTTTTGCTGAAAAAATGCGCGGTCAGAAAATTATTTTAAATTTCCTCTTGTCAGGCCGGAATAACTCCCTATAATGCGCCACCACTGACACGGAACAACGGCAAACACGCCGCCGGGTCAGCGGGGTTCTCCTGAGAACTCCGGCAGAGAAAGCAAAAATAAATGCTTGACTCTGTAGCGGGAAAGCG > NC_000913/3941423‑3941620 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |