New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 394347921 (0.130)24 (0.160) 11/166 NT 55.1% noncoding (45/76 nt) gltU tRNA‑Glu
?NC_000913 = 4168397 NA (NA)noncoding (26/76 nt) gltT tRNA‑Glu

CTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3943375‑3943479
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGG  <  NC_000913/4168397‑4168300
                                                                                                                                                                                                            
CTCACACAGATTGTCTGATAGGAAGTGAAAATCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACG                                                                                                          >  2:1778067/1‑100
CTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACG                                                                                                          >  2:3388275/1‑100
CTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACG                                                                                                          >  2:15999/1‑100
CTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACG                                                                                                          <  2:3175000/100‑1
  CACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGC                                                                                                        <  1:1162605/100‑1
  CACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGC                                                                                                        >  2:3549178/1‑100
  CACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGC                                                                                                        <  1:2270452/100‑1
    catagtTTGTCTGATAGGAAGTTAAAAGCAAGGCGGCGTGCGAAGGAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGG                                                                                                      <  1:4077543/94‑1
    CACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGG                                                                                                      >  2:2030783/1‑100
    CACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGG                                                                                                      <  1:136777/100‑1
    CACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGG                                                                                                      <  2:486629/100‑1
    CACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGG                                                                                                      <  1:171239/100‑1
    CACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGG                                                                                                      >  1:17663/1‑100
     ACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGT                                                                                                     <  2:2232705/100‑1
     ACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGT                                                                                                     <  1:3185930/100‑1
            GTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCGTGAAAGGGCGGTGTCCTGG                                                                                              <  2:499467/100‑1
            GTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCGTGAAAGGGCGGTGTCCTGG                                                                                              <  2:1777571/100‑1
             TCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCGTGAAAGGGCGGTGTCCTGGG                                                                                             <  2:3898974/100‑1
             TCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCGTGAAAGGGCGGTGTCCTGGG                                                                                             <  1:2903749/100‑1
                                                                     GTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGT                                     >  2:596498/1‑100
                                                                            GGCCCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGT                              >  1:2105330/1‑100
                                                                              CCCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGA                            >  2:3620210/1‑100
                                                                              CCCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGA                            >  1:955324/1‑100
                                                                              CCCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGA                            >  1:1192656/1‑100
                                                                               CCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAG                           >  2:2230774/1‑100
                                                                               CCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAG                           >  1:4022485/1‑100
                                                                               CCAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGT                              >  1:1315184/1‑97
                                                                                CAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTCGGGTGAGC                          >  1:2661157/1‑100
                                                                                CAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGC                          >  1:2957230/1‑100
                                                                                CAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGC                          >  2:3859852/1‑100
                                                                                CAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGC                          >  2:1240835/1‑100
                                                                                CAGGACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGC                          >  1:1386422/1‑100
                                                                                   GACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTT                       >  1:1438532/1‑100
                                                                                    ACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC                      >  2:2351000/1‑100
                                                                                    ACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC                      >  2:1023546/1‑100
                                                                                    ACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC                      <  2:1386427/100‑1
                                                                                    ACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGCGTAGGGTGAGCTTTC                      >  1:843912/1‑100
                                                                                    ACACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTCGCGTGATATTTTCGTGTAGGGTGAGCTTTC                      >  1:1286142/1‑100
                                                                                     CACCGCCCTTTCACGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑A                    >  1:2588989/1‑100
                                                                                                   GGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGA      >  2:3461207/1‑100
                                                                                                    GCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCG       >  2:3118760/1‑98
                                                                                                     ctGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAAC    <  1:3230300/98‑1
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  2:1277048/100‑5
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  1:1540994/100‑5
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  2:755339/100‑5
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  1:413678/100‑5
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  2:2066379/100‑5
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  2:111212/100‑5
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAAC    <  2:3182583/100‑1
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAAC    <  1:2472644/100‑1
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTGCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAAC    >  1:2738707/1‑100
                                                                                                     CGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGAGATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  1:188228/100‑5
                                                                                                     CGGGGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  1:2376727/100‑5
                                                                                                      GGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcacc   <  2:2925620/100‑6
                                                                                                      GGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACG   <  2:93647/100‑1
                                                                                                      GGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACG   >  1:169703/1‑100
                                                                                                      GGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTGGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcac    <  1:2185138/99‑5
                                                                                                       GTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCTATTAAT‑GAAAGCtcaccc  <  1:4378081/100‑7
                                                                                                       GTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTGATAGAAAGCGAACGG  >  2:4341556/1‑100
                                                                                                       GTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACag  >  2:3230317/1‑98
                                                                                                                                                                                                            
CTCACACAGATTGTCTGATAGGAAGTGAAAAGCAAGGCGTCTTGCGAAGCAGACTGATACGTCCCCTTCGTCTAGAGGCCCAGGACACCGCCCTTTCACGGCGGT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3943375‑3943479
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggcggtGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTC‑ATTAATAGAAAGCGAACGG  <  NC_000913/4168397‑4168300

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.