New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4103511 =	NA (NA)	8 (0.060)	4/164	NT	NA	noncoding (5/84 nt)	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	4103544 =	NA (NA)					noncoding (38/84 nt)	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4103616‑4103511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTA  >  NC_000913/4103544‑4103642                                                                                                                                                                                                               TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTA                                                                                                           >  2:2766118/1‑100  ATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTAT                                                                                                          >  2:2503079/1‑100  ATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTAT                                                                                                          <  2:1001278/100‑1  ATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTAT                                                                                                          <  2:3904681/100‑1   TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATC                                                                                                         >  2:4360092/1‑100   TAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATC                                                                                                         <  1:2029705/100‑1   TAAGCGGAGTTAAACTTCGCATTTGCAGGAAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCCGGATGCCTGATGCGACGCTGATAGCGTCTTATC                                                                                                         <  1:2642025/100‑1    AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCA                                                                                                        >  1:1649894/1‑100    AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCA                                                                                                        <  1:2543896/100‑1    AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCA                                                                                                        <  1:2944495/100‑1    AAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTATACGCCGCATCCGGCATTTAAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCA                                                                                                        >  1:2401615/1‑100     AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAG                                                                                                       <  1:202309/100‑1     AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAG                                                                                                       <  2:1876734/100‑1     AGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAG                                                                                                       >  2:4293175/1‑100      GCGGAGTTAAACTTCGCATTTGCAGGGAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAG                                                                                                       <  2:3325199/99‑1      GCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGG                                                                                                      >  2:2292908/1‑100      GCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGG                                                                                                      >  2:1391337/1‑100      GCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGG                                                                                                      >  1:2788138/1‑100      GCGGAGTTAAACTTCGAATTTGCAGGCAGGATATGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGATGATAGCGTCTTATCAGG                                                                                                      <  1:3732806/100‑1       CGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGC                                                                                                     <  2:3437321/100‑1        GGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATCCCTGCTGCGCCGCTGATAGCGTCTTATCAcacc                                                                                                    >  2:1902875/1‑96                                                                   GCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTT                                         >  1:1423598/1‑100                                                                      GGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAC                                      >  2:407927/1‑100                                                                      GGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAC                                      >  1:1996679/1‑100                                                                      GGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAC                                      >  2:3060036/1‑100                                                                       GATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACT                                     >  1:1488518/1‑100                                                                       GATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACT                                     >  1:2278700/1‑100                                                                       GATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACT                                     >  2:2967143/1‑100                                                                        ATGCCTGATGCGACGCTGATAGCGTCTTATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAtggc                                    >  2:1641552/1‑96                                                                                                     TCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAG       >  1:3161455/1‑100                                                                                                      CAGGCATCCTGCTCAAATGCCGGATGCGGCGTCAACGCCTTAGCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      <  1:3092409/100‑1                                                                                                      CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      <  1:4058839/100‑1                                                                                                      CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      <  1:4114630/100‑1                                                                                                      CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      >  2:4178299/1‑100                                                                                                      CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGC      >  2:1377146/1‑100                                                                                                      CAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAG       <  2:186708/99‑1                                                                                                       AGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCC     >  2:683206/1‑100                                                                                                        GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGGCTTATCCTGCCTGCACATGCGAAGTTTAACTCCGTTTATATAGTGGCAACCAAATCACCAGCCG    <  1:1251042/100‑1                                                                                                        GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    <  2:269181/100‑1                                                                                                        GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    <  2:2366998/100‑1                                                                                                        GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    >  1:561781/1‑100                                                                                                        GGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    >  2:742215/1‑100                                                                                                          CATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTA  <  1:4277634/100‑1                                                                                                          CATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCG    <  2:4106937/98‑1                                                                                                                                                                                                               TATAAGCGGAGTTAAACTTCGCATTTGCAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATTTGAGCAGGATGCCTGATGCGACGCTGATAGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4103616‑4103511 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTA  >  NC_000913/4103544‑4103642

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.