New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4103511 =NA (NA)8 (0.060) 4/164 NT NA noncoding (5/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4103544 = NA (NA)noncoding (38/84 nt) REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences REP301 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 220 total aligned reads displayed.

CCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTAA  >  NC_000913/4103445‑4103643
                                                                                                   |                                                                                                   
  gACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATc                                                                                                   >  1:1023287/1‑100 (MQ=255)
  agttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATc                                                                                                   >  1:1488518‑M1/65‑100 (MQ=255)
   gttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATcc                                                                                                  >  2:3060036‑M1/64‑100 (MQ=255)
   gttaaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATcc                                                                                                  >  2:407927‑M1/64‑100 (MQ=255)
   aCTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATcc                                                                                                  <  1:521662/100‑1 (MQ=255)
   aCTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATcc                                                                                                  <  1:2211041/100‑1 (MQ=255)
    cTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCt                                                                                                 >  2:2560173/1‑100 (MQ=255)
    cTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCt                                                                                                 <  2:3023228/100‑1 (MQ=255)
      gAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATATGACGCTATCAGCGTCGCTTCAGGCATCCTGc                                                                                               <  2:2966394/100‑1 (MQ=255)
      aaacttcgcatttgcaggcaggataaggcgtttacgccgcatccggcatttgagcaggatGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGc                                                                                               >  1:1423598‑M1/61‑100 (MQ=255)
        gCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTc                                                                                             >  2:2835550/1‑100 (MQ=255)
           gCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCaaa                                                                                          >  2:1422682/1‑100 (MQ=255)
               gATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGcc                                                                                      <  1:2775118/100‑1 (MQ=255)
                aTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGccn                                                                                     <  2:686122/100‑2 (MQ=255)
                aTCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCg                                                                                     >  2:3715797/1‑100 (MQ=255)
                  cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                                                   >  2:3488727/1‑100 (MQ=255)
                  cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                                                   >  1:1246651/1‑100 (MQ=255)
                  cGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                                                   >  2:2788154/1‑100 (MQ=255)
                   gAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGa                                                                                   >  1:1823834/1‑99 (MQ=255)
                    aaGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATg                                                                                 >  1:1426395/1‑100 (MQ=255)
                    aaGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATg                                                                                 <  1:3155076/100‑1 (MQ=255)
                     aGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgc                                                                                >  2:3174038/1‑100 (MQ=255)
                      gATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcg                                                                               >  1:2842876/1‑100 (MQ=255)
                        tttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggc                                                                             <  2:1143597/100‑1 (MQ=255)
                         ttttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                                                            <  1:1193847/100‑1 (MQ=255)
                          tttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATgcggcg                                                                            <  1:4391140/99‑1 (MQ=255)
                           ttCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTa                                                                          <  1:1133754/100‑1 (MQ=255)
                                gccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGc                                                                     >  1:1087311/1‑100 (MQ=255)
                                gccgGTTGTGGGGAAAATAAACCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGc                                                                     >  1:1363001/1‑100 (MQ=255)
                                 ccgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGcc                                                                    <  2:4127470/100‑1 (MQ=255)
                                  cgGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCt                                                                   <  2:3292715/100‑1 (MQ=255)
                                    gTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTa                                                                 <  2:2032658/100‑1 (MQ=255)
                                        tgGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcct                                                             <  2:3507048/100‑1 (MQ=255)
                                         ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                                                            >  1:866653/1‑100 (MQ=255)
                                         ggggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctg                                                            >  2:920139/1‑100 (MQ=255)
                                          gggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgc                                                           <  1:1916910/100‑1 (MQ=255)
                                           ggAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcc                                                          <  1:2120162/100‑1 (MQ=255)
                                             aaaaTAACCCCCGGAGTGTAGGCCTGATATGACGCTATCAGCGTCGCATCAGGTATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATcctgcctg                                                        <  2:1459774/100‑1 (MQ=255)
                                               aaTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCa                                                      <  2:2659180/100‑1 (MQ=255)
                                               aaTAACCCCCGGAGTGTAGGCCTGATAAGACGCTAGCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCa                                                      <  1:1525608/100‑1 (MQ=255)
                                                aTAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCaa                                                     >  1:3545304/1‑100 (MQ=255)
                                                  aaCCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAAt                                                   <  2:3744670/100‑1 (MQ=255)
                                                   aCCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATg                                                  >  1:3071651/1‑100 (MQ=255)
                                                    cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAATGCCTTATCCTGCCTGCAAATGc                                                 >  1:2466906/1‑100 (MQ=255)
                                                    cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                                                 <  2:358906/100‑1 (MQ=255)
                                                    cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                                                 <  1:199614/100‑1 (MQ=255)
                                                    cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                                                 >  1:612924/1‑100 (MQ=255)
                                                    cccccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGc                                                 >  1:1698079/1‑100 (MQ=255)
                                                     caccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCg                                                <  1:2659993/98‑1 (MQ=255)
                                                       ccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGaa                                              <  1:2091367/100‑1 (MQ=255)
                                                       ccGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGaa                                              >  1:2045513/1‑100 (MQ=255)
                                                        cGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAg                                             <  2:3776859/100‑1 (MQ=255)
                                                            gtgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTa                                         <  1:989124/100‑1 (MQ=255)
                                                            gtgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTa                                         <  1:318892/100‑1 (MQ=255)
                                                            gtgtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGACGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTa                                         <  1:2750676/100‑1 (MQ=255)
                                                              gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       <  2:2089651/100‑1 (MQ=255)
                                                              gtAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAAc                                       >  2:567821/1‑100 (MQ=255)
                                                               tAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACt                                      >  2:4086412/1‑100 (MQ=255)
                                                               gatgcctgatgcgacgctgatagcgtcttatcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACt                                      >  2:2967143‑M2/37‑100 (MQ=255)
                                                               gatgcctgatgcgacgctgatagcgtcttatcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACt                                      >  1:2278700‑M2/37‑100 (MQ=255)
                                                                atgcctgatgcgacgctgatagcgtcttatcaggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAgtttatggc                                     >  2:1641552‑M2/36‑96 (MQ=255)
                                                                 ggtgTGATAAGACGCTATCAGCGGCGCAGCAGGGATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc                                    >  2:1902875‑M1/5‑100 (MQ=255)
                                                                 ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc                                    >  2:1595662/1‑100 (MQ=255)
                                                                 ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc                                    >  2:3452697/1‑100 (MQ=255)
                                                                 ggCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTcc                                    >  2:3391660/1‑100 (MQ=255)
                                                                    CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCt                                 <  1:202309‑M1/100‑1 (MQ=255)
                                                                    CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCt                                 >  2:4293175‑M1/1‑100 (MQ=255)
                                                                    CTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTCCCTGCAAATGCGAAGTTTAACTCCGc                                  <  2:3325199‑M1/99‑1 (MQ=255)
                                                                     TGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCtt                                <  1:2543896‑M1/100‑1 (MQ=255)
                                                                     TGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCtt                                >  1:1649894‑M1/1‑100 (MQ=255)
                                                                      tcttccgatcTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTta                               <  1:2332255/91‑1 (MQ=255)
                                                                      GATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTta                               >  2:4360092‑M1/1‑100 (MQ=255)
                                                                      GATAAGACGCTATCAGCGTCGCATCAGGCATCCGGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTTCCTGCAAATGCGAAGTTTAACTCCGCTta                               <  1:2642025‑M1/100‑1 (MQ=255)
                                                                       ATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTtat                              <  2:3904681‑M1/100‑1 (MQ=255)
                                                                       ATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTtat                              >  2:2503079‑M1/1‑100 (MQ=255)
                                                                       ATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTtat                              <  2:1001278‑M1/100‑1 (MQ=255)
                                                                          aGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACa                           >  1:3383153/1‑100 (MQ=255)
                                                                             cGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCg                        >  1:362083/1‑100 (MQ=255)
                                                                              gCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCgg                       <  1:3772151/100‑1 (MQ=255)
                                                                              gCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCgg                       <  2:1773492/100‑1 (MQ=255)
                                                                              gCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCgg                       <  1:3964857/100‑1 (MQ=255)
                                                                              gCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCgg                       <  1:2954674/100‑1 (MQ=255)
                                                                              gCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCgg                       <  2:3885760/100‑1 (MQ=255)
                                                                               cTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGc                      >  2:1086349/1‑100 (MQ=255)
                                                                                tATCAGCGTCGCATCAGTCATCCTGCTCAAATGCCAAATGCAGCGTAAACGCCTTATCCTGCCTGCAAATGCTAATTTTAACTCCTCTTATACatca                        <  1:973877/97‑4 (MQ=25)
                                                                                tATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTACGCTTATACAGCGGCa                     >  1:2265099/1‑100 (MQ=255)
                                                                                  tCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAAc                   <  1:787414/100‑1 (MQ=255)
                                                                                   cAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAAcc                  <  2:3071668/100‑1 (MQ=255)
                                                                                   cAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAAcc                  <  1:4256573/100‑1 (MQ=255)
                                                                                   cAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAAcc                  <  1:369616/100‑1 (MQ=255)
                                                                                         cGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAATGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCa            <  2:2466918/100‑1 (MQ=255)
                                                                                          gCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCAc           >  1:47475/1‑100 (MQ=255)
                                                                                              caggcATCCTGCTCAAATGCCGGATGCGGCGTCAACGCCTTAGCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGc       <  1:3092409‑M2/95‑1 (MQ=255)
                                                                                              caggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAg        <  2:186708‑M2/94‑1 (MQ=255)
                                                                                              caggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGc       >  2:1377146‑M2/6‑100 (MQ=255)
                                                                                              caggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGc       >  2:4178299‑M2/6‑100 (MQ=255)
                                                                                              caggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGc       <  1:4114630‑M2/95‑1 (MQ=255)
                                                                                              caggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGc       <  1:4058839‑M2/95‑1 (MQ=255)
                                                                                                ggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCg     <  2:2366998‑M2/97‑1 (MQ=255)
                                                                                                ggcATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCg     >  2:742215‑M2/4‑100 (MQ=255)
                                                                                                   |                                                                                                   
CCGACTGAGCGGCAAGATCGAAGATTTTTCCCGCCGGTTGTGGGGAAAATAACCCCCGGAGTGTAGGCCTGATAAGACGCTATCAGCGTCGCATCAGGCATCCTGCTCAAATGCCGGATGCGGCGTAAACGCCTTATCCTGCCTGCAAATGCGAAGTTTAACTCCGCTTATACAGCGGCAACCAAATCACCAGCCGTAA  >  NC_000913/4103445‑4103643

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.