| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4229380 = | NA (NA) | 20 (0.140) | 12/164 | NT | NA | noncoding (5/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4229413 = | NA (NA) | noncoding (38/70 nt) | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4229484‑4229380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGT > NC_000913/4229413‑4229512 CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGCTCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTAT < 1:4177955/100‑1CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTTGTCATAGTGCCTGATGCGACGCTTGACGCGTCTTAT > 1:1996430/1‑100CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTAT < 1:4179115/100‑1 GGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTAgc < 2:4072867/100‑3 GGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATC < 2:3454492/100‑1 GTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCA < 1:457680/100‑1 GTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATACGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCA > 2:2876342/1‑100 TTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAG > 2:399365/1‑100 TTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGAGGCGACGCTTGACGCGTCTTATCAG > 2:1743365/1‑100 TCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGG < 1:3626314/100‑1 TCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGG < 2:3324246/100‑1 TCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGG > 2:3484349/1‑100 CGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTTCCTGATGCGACGCTTGATGCGTCTTATCAtg < 2:2966709/98‑3 GGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGG > 1:3009764/1‑100 CATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTG > 2:2442204/1‑100 tcTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACC < 2:1505260/98‑1 GTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGa > 1:1505255/1‑99 TTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCT > 2:1278700/1‑100 TTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCT > 2:443409/1‑100 CATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTC > 1:3832656/1‑100 ATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCCTCCGGCAATTCACTTAAAAACGGTGACCAGCTTCC > 1:1089589/1‑100 TAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCA > 1:262642/1‑100 TAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCA > 1:1637015/1‑100 TAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCA > 1:1636523/1‑100 AGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAG > 1:3557624/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:278801/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 1:4306083/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:3779207/1‑100 GTGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGC > 2:925549/1‑100 TGCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCG > 1:2166594/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGG > 1:4280051/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGG > 1:394604/1‑100 GCCTGATGCGACGCTTGACGCGTCTTATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATGCACTTAAAAACGGTGACCAGCTTCCAGCG > 1:642289/1‑99 gcagCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAA > 1:1744435/5‑100 TATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAAC < 2:3557643/100‑1 ATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACA > 1:4333002/1‑100 ATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACA < 2:2878146/100‑1 ATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAAC < 1:1548220/99‑1 TCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGatcggaagag > 1:2673574/1‑90 CAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACA < 1:1100565/100‑1 CAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACA < 1:1407275/98‑1 GGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATA < 1:3779183/100‑1 GGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTT‑‑‑AACTGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACAGAAGT > 1:2152297/1‑100 CACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAG < 2:151411/100‑1 CGGTTCCGCTGGAAGCTGGTCACCGTTTTTAAGTGAATTGCCGGATGCATGATCCGGCATCTTGTTCATAGTGCCTGATGCGACGCTTGACGCGTCTTATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4229484‑4229380‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGT > NC_000913/4229413‑4229512 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |