New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4229380 =NA (NA)20 (0.140) 12/164 NT NA noncoding (5/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4229413 = NA (NA)noncoding (38/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 260 total aligned reads displayed.

GCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCG  >  NC_000913/4229281‑4229478
                                                                                                   |                                                                                                   
cttatgtgtttaaggctggtgaagaagcggttccgctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtg                                                                                                     <  2:151411‑M1/1‑1 (MQ=255)
  gcCTGGCCTCGCGGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGcc                                                                                                   <  2:1541980/100‑1 (MQ=255)
  acttctgtgtttaaggctggtgaagaagcggttccgctggaagctggtcacagttaagtgaattgccggatgcatgatccggcatcttgttcatagtGcc                                                                                                   >  1:2152297‑M1/98‑100 (MQ=255)
   ccTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCt                                                                                                  >  1:3917262/1‑100 (MQ=255)
      tgtttaaggctggtgaagaagcggttccgctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTg                                                                                                 <  1:1407275‑M1/5‑1 (MQ=255)
      tgtttaaggctggtgaagaagcggttccgctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGAt                                                                                               <  2:2878146‑M1/7‑1 (MQ=255)
       aaCTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATa                                                                                              <  2:1664628/100‑1 (MQ=255)
        tttaaggctggtgaagaagcggttccgctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtgcctgctgc                                                                                             >  1:1744435‑M1/92‑96 (MQ=255)
         cTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAg                                                                                            >  2:2297296/1‑100 (MQ=255)
         cTCGCTGTGTTGTTCGGTGTCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAg                                                                                            <  1:2780613/100‑1 (MQ=255)
               gTTTTTTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGt                                                                                      >  2:972444/1‑100 (MQ=255)
               gTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGt                                                                                      <  2:3763446/100‑1 (MQ=255)
               gTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGt                                                                                      >  2:2941225/1‑100 (MQ=255)
               gTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGt                                                                                      >  2:3197314/1‑100 (MQ=255)
                ttttttTAGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGTACGAGTATTAATATTGTGAATCCTGTAGGTCTGATAAGAGGCGTc                                                                                     <  1:1195265/100‑1 (MQ=255)
                  ttGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCa                                                                                    >  1:1512931/1‑99 (MQ=255)
                  ntGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCaa                                                                                   >  1:3224327/2‑100 (MQ=255)
                   tGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAg                                                                                  >  1:2929555/1‑100 (MQ=255)
                   tGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAg                                                                                  >  2:1895411/1‑100 (MQ=255)
                    gTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGc                                                                                 >  2:872738/1‑100 (MQ=255)
                    gTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGc                                                                                 >  2:2018474/1‑100 (MQ=255)
                     ttCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCg                                                                                <  1:3269627/100‑1 (MQ=255)
                      tCGGTGGCTTAGAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGt                                                                               >  1:3376808/1‑100 (MQ=255)
                       cGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTc                                                                              <  1:2287414/100‑1 (MQ=255)
                             cTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa                                                                        >  2:2648321/1‑100 (MQ=255)
                             cTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa                                                                        >  2:2818907/1‑100 (MQ=255)
                             cTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCa                                                                        >  1:2220283/1‑100 (MQ=255)
                              ttACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAg                                                                       >  2:2754684/1‑100 (MQ=255)
                                ccgctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGc                                                                     >  1:4280051‑M1/68‑100 (MQ=255)
                                aCAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGATTATTAATATTGTGAATCCTGTAGGCCTGATGCGACGCTTGACGCGTCTTATCAGGc                                                                     <  2:911388/100‑1 (MQ=25)
                                aCAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAggn                                                                     <  1:2872705/100‑2 (MQ=255)
                                 cgctggaagctggtcaccgtttttaagtgcattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGc                                                                     >  1:642289‑M1/67‑99 (MQ=255)
                                  gctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCAc                                                                   >  1:4306083‑M1/66‑100 (MQ=255)
                                   gtgtGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATGCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACt                                                                  >  1:1015475/1‑100 (MQ=255)
                                   ctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACt                                                                  >  1:3557624‑M1/65‑100 (MQ=255)
                                    tgtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa                                                                 <  2:3901493/100‑1 (MQ=255)
                                    tggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa                                                                 >  1:262642‑M1/64‑100 (MQ=255)
                                     gtgCTGGGACAGCCGTATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGTCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTa                                                                 <  2:1461479/99‑1 (MQ=255)
                                     gtgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGAACTAt                                                                >  2:2584512/1‑100 (MQ=255)
                                     ggaagctggtcaccgtttttaagtgaattgccggaggcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                >  1:1089589‑M1/63‑100 (MQ=255)
                                      tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCAGATGCGACGCTTGACGCGTCTTATCAGGcctacag                                                               <  1:3083378/100‑7 (MQ=21)
                                       gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                              <  1:3846897/100‑1 (MQ=255)
                                       gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                              <  2:2441022/100‑1 (MQ=255)
                                        cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                             <  2:822595/100‑1 (MQ=255)
                                        cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                             >  1:616999/1‑100 (MQ=255)
                                        cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                             >  2:424147/1‑100 (MQ=255)
                                        cTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                             >  1:818797/1‑100 (MQ=255)
                                        agctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGaa                                                             >  2:1278700‑M1/60‑100 (MQ=255)
                                         tGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc                                                            >  2:3112489/1‑100 (MQ=255)
                                          ggAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGa                                                              >  1:2433210/1‑97 (MQ=255)
                                            aaCAGCCGTATGAAGATGAATGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                         <  1:3658519/100‑1 (MQ=255)
                                              cAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGAt                                                       <  2:1833869/100‑1 (MQ=255)
                                              cAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGAt                                                       >  1:3457700/1‑100 (MQ=255)
                                               aGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATg                                                      >  2:1503042/1‑100 (MQ=255)
                                                gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                     >  1:2932864/1‑100 (MQ=255)
                                                gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                     <  2:621546/100‑1 (MQ=255)
                                                gCCGGATGAAGATGAAGGACGGGACGAGTATCAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                     >  2:3278013/1‑100 (MQ=255)
                                                 ccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGcc                                                    >  1:3009764‑M1/51‑100 (MQ=255)
                                                 ccGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGcc                                                    <  1:1261311/100‑1 (MQ=255)
                                                  cGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCg                                                   <  2:3376384/100‑1 (MQ=255)
                                                   ggATGAAGATGAAGGGCGGGACGAGTATTAATATTGCGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCgg                                                  <  1:1582838/100‑1 (MQ=255)
                                                        aagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCAt                                            >  1:4347096/1‑100 (MQ=255)
                                                        aagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCAt                                            >  2:3784953/1‑100 (MQ=255)
                                                        aagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCAt                                            <  2:3390660/100‑1 (MQ=255)
                                                         agatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATg                                           <  2:1218303/100‑1 (MQ=255)
                                                          gatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATg                                           >  2:2541229/1‑99 (MQ=255)
                                                           atgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCa                                         <  2:2139631/100‑1 (MQ=255)
                                                           aggaagGAGGGGACGAGTATTAATATTGTGAATCCTGTAGGCATGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCa                                         <  1:1025762/98‑1 (MQ=255)
                                                                ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCgg                                    >  1:2890427/1‑100 (MQ=255)
                                                                ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCgg                                    >  2:2993094/1‑100 (MQ=255)
                                                                 gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc                                   <  2:50485/100‑1 (MQ=255)
                                                                 gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc                                   <  1:1292577/100‑1 (MQ=255)
                                                                 gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc                                   >  1:1151506/1‑100 (MQ=255)
                                                                  acgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATGATCCGGCa                                  <  1:3180992/100‑1 (MQ=25)
                                                                   ctggccgAGTATTAATATTGTGAAACCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATGATCCGGCat                                 <  1:378424/95‑2 (MQ=21)
                                                                   cgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATGATCCGGCat                                 <  1:3743308/100‑2 (MQ=25)
                                                                    gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCCTCCGGCAAt                                >  1:4129723/1‑100 (MQ=255)
                                                                    gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAAt                                <  2:4384894/100‑1 (MQ=255)
                                                                    gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAAt                                >  1:4083965/1‑100 (MQ=255)
                                                                    gggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAAt                                <  1:466153/100‑1 (MQ=255)
                                                                      gacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTc                              >  1:2112666/1‑100 (MQ=255)
                                                                      gacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTc                              >  1:1950293/1‑100 (MQ=255)
                                                                       acgATTATTAATATTGTGAATCCTGTAGGCCTGAGAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCTGATGCATGATCCGGCatct                               <  1:1607545/98‑4 (MQ=21)
                                                                       acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGTATCATGCATCCGGCAATTCa                             <  1:2684385/100‑1 (MQ=255)
                                                                        cgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATGCATGATCCGGCatcttgt                            >  2:1355856/1‑94 (MQ=25)
                                                                         gAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACt                           >  1:1101442/1‑100 (MQ=255)
                                                                         gAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACt                           <  1:580758/100‑1 (MQ=255)
                                                                             aTTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaa                       >  2:790695/1‑100 (MQ=255)
                                                                              ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaa                      >  2:2828991/1‑100 (MQ=255)
                                                                              ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaa                      >  2:3882097/1‑100 (MQ=255)
                                                                                   atTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTCTGAACAAGATGCCGGATCATGCATCCGGCACTTCACTTAAAAACGGt                 >  1:3882379/1‑100 (MQ=255)
                                                                                   atTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGt                 >  2:1136182/1‑100 (MQ=255)
                                                                                   atTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGt                 >  1:2406647/1‑100 (MQ=255)
                                                                                       tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAcc             <  2:3482747/100‑1 (MQ=255)
                                                                                       tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAc              <  1:1656327/99‑1 (MQ=255)
                                                                                         aaTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAg           >  2:4046831/1‑100 (MQ=255)
                                                                                          aTCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAg           <  1:248419/99‑1 (MQ=255)
                                                                                                 aGGCCTGATAAGACGCGTGAAGCGTCTCTTGAGGCACGATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc   <  1:3335251/100‑1 (MQ=38)
                                                                                                 aGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc   >  2:664870/1‑100 (MQ=255)
                                                                                                  ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg  >  1:377672/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
GCGCCTGAACTCGCTGTTTTGTTCGGTGGCTTACAGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCG  >  NC_000913/4229281‑4229478

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.