| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4450948 = | NA (NA) | 12 (0.080) | 9/164 | NT | NA | noncoding (5/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 4450978 = | NA (NA) | noncoding (35/85 nt) | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
CCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4451052‑4450948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACC > NC_000913/4450978‑4451076 CCCCCGGTGTAAAGCGTGCTCCCAGTCGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTAT > 2:2601969/1‑100 CCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGCTAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATC > 2:2483858/1‑100 CCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATC > 2:2218425/1‑100 CCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATC > 2:1782245/1‑100 CCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATC > 2:2474724/1‑100 CCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATC > 1:4040371/1‑100 CCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGCCGCGGTAAGCGTCGCAGCAGGCTTCCGTGCACCATCGCCGGATGCGGCGCGAGCGCATTAT > 1:374420/1‑98 CCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCC > 1:2461092/1‑100 CCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCC < 2:1359430/100‑1 CCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCC > 1:374481/1‑100 CCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGGGAGCGCCTTATCCG > 2:2482992/1‑100 CCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCG > 1:2153419/1‑100 CCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCG > 2:2200383/1‑100 CCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCG > 2:2413867/1‑100 CCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCG > 2:78360/1‑100 CGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCGG > 2:2545957/1‑100 GGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCGGC > 1:2510085/1‑100 GGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCGGC < 1:546770/100‑1 GGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 2:786338/100‑1 GGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 2:1724556/100‑1 GGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 2:276794/100‑1 GGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATAAGGCGCTCGCGCCGCATCCGGC < 1:2877934/100‑1 GTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATAAGGCGCTCGCGCCGCATCCGGCG < 1:3464912/100‑1 GTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATAAGGCGCTCGCGCCGCATCCGGCG < 2:1974939/100‑1 ACCATCGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTT > 2:475592/1‑100 CCATCGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTT > 1:2485647/1‑100 ATCGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > 1:1842412/1‑100 ATCGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > 2:1746580/1‑100 ATCGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTAC > 2:3890781/1‑100 TCGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACA > 2:141136/1‑100 GCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACC > 1:89970/1‑100 GCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACC > 1:2418410/1‑100 GGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG > 1:4171115/1‑100 GGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGG > 1:1624231/1‑100 TGCGGCGCGAGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGA > 1:1498645/1‑100 CGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATG > 1:4102854/1‑100 tTCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACC < 1:2657629/99‑1 ATCCGGCGATGGTGCACTGGAGCCTGATGCGACGCTTACCGCGTCTTATCATGCGTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACC < 1:3360143/100‑1 ATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACC < 1:1244907/100‑1 TCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAACCCATGACGCCCGACCA > 1:610961/1‑100 TCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCA < 1:595443/100‑1 TCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCA > 2:2657642/1‑100 TCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCA > 2:3233384/1‑100 TCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGAC < 1:2174972/98‑1 CCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAA > 2:1493595/1‑100 CCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCA > 1:1754996/1‑99 CGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAAC > 1:38801/1‑100 GGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACA < 2:1956262/100‑1 GGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACA < 1:2138435/100‑1 GGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACA > 1:1376747/1‑100 GGCGATGGTGCACTGAAGCCTGAGGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACC < 1:2940540/96‑1 GCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACAC > 2:2606898/1‑100 GCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACAC < 2:4146271/100‑1 CGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACC < 2:576608/100‑1 CGATGGTGCACTGAAGCCTGAAGCGACGCTTACCGCGTATTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACC > 1:1047144/1‑100 CCCCCGGTGTAAAGCGTGCTCCCAGTAGGCATGATAAGACGCGGTAAGCGTCGCATCAGGCTTCAGTGCACCATCGCCGGATGCGGCGCGAGCGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4451052‑4450948‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACC > NC_000913/4450978‑4451076 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |