BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4450948 =	NA (NA)	12 (0.080)	9/164	NT	NA	noncoding (5/85 nt)	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	4450978 =	NA (NA)	12 (0.080)	9/164	NT	NA	noncoding (35/85 nt)	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP336 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 258 total aligned reads displayed.

AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACC  >  NC_000913/4450881‑4451076

   aagaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGt                                                                                               <  2:3547127/100‑1 (MQ=255)

    agaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTg                                                                                              <  1:2298043/100‑1 (MQ=255)

     gaaTTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGc                                                                                             >  1:581637/1‑100 (MQ=255)

        ctAGAGAAGAAGAAAACTAAGGATAATTGAGAGTTGCTATGCCTGATGCCGAATAGAAGGCCGGGAAAGACGGCCGCGCCGCATCCGGGGATGGTGCagt                                                                                          >  1:709019/2‑98 (MQ=255)

         tAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTg                                                                                         <  1:505192/100‑1 (MQ=255)

         tAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTg                                                                                         >  2:729596/1‑100 (MQ=255)

          agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGa                                                                                        >  1:1118157/1‑100 (MQ=255)

          agagAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCATGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGa                                                                                        >  1:1813159/1‑100 (MQ=255)

           gagaAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGaa                                                                                       >  2:3765746/1‑100 (MQ=255)

            agaagaagaAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAg                                                                                      <  1:2478619/100‑1 (MQ=255)

             gaagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGCTAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGc                                                                                     >  1:3916011/1‑100 (MQ=255)

              aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCTGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc                                                                                    <  1:2817942/100‑1 (MQ=255)

              aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc                                                                                    <  2:1376074/100‑1 (MQ=255)

              aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc                                                                                    <  1:3969155/100‑1 (MQ=255)

              aagaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGcc                                                                                    <  2:3284632/100‑1 (MQ=255)

               agaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCt                                                                                   >  2:2693153/1‑100 (MQ=255)

                gaagaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTg                                                                                  >  1:2041554/1‑100 (MQ=255)

                  tgaaAAATATGGGGCAGTGAGGTTTGCTAGGCCTGATGCCGATTCGTAGGCCGGATAAGTCGCGAGCACAGCATCCGGCGATGGTGCAATGAAGCCt                                                                                   >  1:4187359/2‑97 (MQ=255)

                  agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTgct                                                                                >  1:2703371/1‑98 (MQ=255)

                  agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt                                                                                >  2:4098736/1‑100 (MQ=255)

                  agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt                                                                                >  2:2502331/1‑100 (MQ=255)

                  agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt                                                                                >  1:1015120/1‑100 (MQ=255)

                  agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt                                                                                >  2:3007217/1‑100 (MQ=255)

                  agaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAt                                                                                >  2:2144625/1‑100 (MQ=255)

                   gaaAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATg                                                                               >  2:1115897/1‑100 (MQ=255)

                       aaTATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGAc                                                                           >  2:2248409/1‑100 (MQ=255)

                          atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt                                                                        <  2:3354728/100‑1 (MQ=255)

                          atGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCt                                                                        <  1:4087681/100‑1 (MQ=255)

                            ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa                                                                      >  1:2170584/1‑100 (MQ=255)

                            ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa                                                                      >  2:1321585/1‑100 (MQ=255)

                            ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa                                                                      >  1:971491/1‑100 (MQ=255)

                            ggggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTa                                                                      >  2:2282072/1‑100 (MQ=255)

                             gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc                                                                     >  2:648534/1‑100 (MQ=255)

                             gggTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTAc                                                                     >  2:3608124/1‑100 (MQ=255)

                               gTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcg                                                                   >  1:840990/1‑100 (MQ=255)

                                 aTTGAGGGTTGCTATGCCTGATGCCGATTCGTGGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg                                                                 <  1:2515080/100‑1 (MQ=255)

                                 aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg                                                                 <  2:2006698/100‑1 (MQ=255)

                                 aTTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACcgcg                                                                 >  2:1423305/1‑100 (MQ=255)

                                         ttGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCa                                                         <  1:373742/100‑1 (MQ=255)

                                           gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg                                                       <  2:1667981/100‑1 (MQ=255)

                                           gCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATg                                                       >  1:3008241/1‑100 (MQ=255)

                                            cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc                                                      >  1:3801352/1‑100 (MQ=255)

                                            cTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGc                                                      >  1:1954695/1‑100 (MQ=255)

                                             tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc                                                     <  2:4246913/100‑1 (MQ=255)

                                             tATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc                                                     >  2:4160529/1‑100 (MQ=255)

                                                gccgcaTGCCGATTCGGAGGCCGGATAAGGCGCGCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGcc                                                     <  1:4310716/92‑1 (MQ=25)

                                                gCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAc                                                  <  2:1652502/100‑1 (MQ=255)

                                                 ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt                                                 <  2:4070557/100‑1 (MQ=255)

                                                 ccTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACt                                                 <  2:1859496/100‑1 (MQ=255)

                                                  cTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg                                                <  1:1492147/100‑1 (MQ=255)

                                                   tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg                                               >  2:1946891/1‑100 (MQ=255)

                                                   tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTgg                                               <  1:3245468/100‑1 (MQ=255)

                                                   tGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTg                                                >  1:1476194/1‑99 (MQ=255)

                                                       gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc                                           <  2:2554465/100‑1 (MQ=255)

                                                       gCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGc                                           >  2:1300698/1‑100 (MQ=255)

                                                        ccGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTAcgaatcggc                                          >  1:4118944/1‑92 (MQ=255)

                                                         cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCa                                          >  2:247823/1‑99 (MQ=255)

                                                         cGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCAc                                         <  1:1432158/100‑1 (MQ=255)

                                                          gATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGTGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGCGAGCat                                         <  1:1960171/99‑2 (MQ=255)

                                                           aTTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGc                                       <  1:3896344/100‑1 (MQ=255)

                                                             tCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCtt                                     <  1:107791/100‑1 (MQ=255)

                                                             accatcgccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCtt                                     >  2:475592‑M2/37‑100 (MQ=255)

                                                              ccatcgccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                    >  1:2485647‑M2/36‑100 (MQ=255)

                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                    <  1:191781/100‑1 (MQ=255)

                                                              cGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                    >  2:3845155/1‑100 (MQ=255)

                                                               gTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCttt                                    <  1:1196931/99‑1 (MQ=255)

                                                                tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                  >  2:97286/1‑100 (MQ=255)

                                                                tAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                  >  2:3447888/1‑100 (MQ=255)

                                                                atcgccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                  >  1:1842412‑M2/34‑100 (MQ=255)

                                                                atcgccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                  >  2:3890781‑M2/34‑100 (MQ=255)

                                                                atcgccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTac                                  >  2:1746580‑M2/34‑100 (MQ=255)

                                                                  ggCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGAGGCGACGCTTACCGCGTCTGATCATGCCTACTGGGACCACGCTTTacac                                >  1:2185978/1‑100 (MQ=255)

                                                                  cGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac                                <  1:3464912‑M1/99‑1 (MQ=255)

                                                                  cGCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTacac                                <  2:1974939‑M1/99‑1 (MQ=255)

                                                                   gccggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc                               >  1:89970‑M2/31‑100 (MQ=255)

                                                                   GCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc                               <  1:2877934‑M1/100‑1 (MQ=255)

                                                                   GCCGGATGCGGCGCGAGCGCCTTATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACAcc                               <  2:276794‑M1/100‑1 (MQ=255)

                                                                     CGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgg                             >  2:2200383‑M1/1‑100 (MQ=255)

                                                                     CGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgg                             >  2:78360‑M1/1‑100 (MQ=255)

                                                                      ggatgcggcgcgagcgccttatccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggg                            >  1:1624231‑M2/28‑100 (MQ=255)

                                                                      GGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCggg                            >  1:2461092‑M1/1‑100 (MQ=255)

                                                                       GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                           >  2:1782245‑M1/1‑100 (MQ=255)

                                                                       GATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCgggg                           >  2:2474724‑M1/1‑100 (MQ=255)

                                                                           aGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGaaa                       >  2:3131062/1‑100 (MQ=255)

                                                                             gcgcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAAcc                     >  1:368375/1‑100 (MQ=255)

                                                                              cgcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCa                    <  2:565561/100‑1 (MQ=255)

                                                                               gcTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCTTACTGGGAGCACGCTTTACACCGGGGGAAACCa                    <  1:2632949/99‑1 (MQ=255)

                                                                                cTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATg                  >  1:4377312/1‑100 (MQ=255)

                                                                                    cgccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATgacga              >  1:3486253/1‑100 (MQ=255)

                                                                                      ccgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGAcgacc            >  1:4002430/1‑100 (MQ=255)

                                                                                       cgcATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGAcgaccg           >  2:2847309/1‑100 (MQ=255)

                                                                                        gcATCCGTCTATGGTGCCCTGAAGCCTGATGCGACGCCTACCGCCTCTCATCATGGCTACTGGGAGCACGCGTTACACCGGGGGAATCCATgacga              <  1:3349513/96‑1 (MQ=255)

                                                                                          atccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACgaccgacc        <  1:1244907‑M2/93‑1 (MQ=255)

                                                                                           tccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCa       >  2:3233384‑M2/7‑100 (MQ=255)

                                                                                            ccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCaa      >  2:1493595‑M2/6‑100 (MQ=255)

                                                                                            ccggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCa       >  1:1754996‑M2/6‑99 (MQ=255)

                                                                                              ggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAaca    >  1:1376747‑M2/4‑100 (MQ=255)

                                                                                              ggcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAaca    <  1:2138435‑M2/97‑1 (MQ=255)

                                                                                              ggcGATGGTGCACTGAAGCCTGAGGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACgaccgacc        <  1:2940540‑M2/93‑1 (MQ=255)

                                                                                               gcGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAacac   >  2:2606898‑M2/3‑100 (MQ=255)

AAGAAGAATTAGAGAAGAAGAAAAATATGGGGTATTGAGGGTTGCTATGCCTGATGCCGATTCGTAGGCCGGATAAGGCGCTCGCGCCGCATCCGGCGATGGTGCACTGAAGCCTGATGCGACGCTTACCGCGTCTTATCATGCCTACTGGGAGCACGCTTTACACCGGGGGAAACCATGACGACCGACCAACACC  >  NC_000913/4450881‑4451076

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.