| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4637524 = | 169 (1.070) | 7 (0.050) | 5/162 | NT | 4.5% | coding (829/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB |
| ? | NC_000913 | 4637555 = | 145 (1.010) | coding (860/1425 nt) | creC | sensory histidine kinase in two‑component regulatory system with CreB or PhoB | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
AGTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4637630‑4637524‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgccgcCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA > NC_000913/4637555‑4637651 AGTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTT > 2:820826/1‑100 TAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCC < 2:3685193/100‑1 TAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCC > 2:557816/1‑100 TAACGTGTCAACCAAAGCCTGCATACGCGCATGTTGCTTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCC < 2:3012985/100‑1 AACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCG < 1:1510485/100‑1 AACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCG > 2:3676803/1‑100 AACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCG < 1:1375824/100‑1 AACGTTTCGACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCG < 2:3403532/100‑1 AACGGTTCTACCAATGCCTGCATACGCGCATCTTGCGTCAGAATATTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTATAATTTCCG > 1:851918/1‑100 ACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACATTCGCGTAAAATTTCCGC < 2:4124513/100‑1 GTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCG > 2:432410/1‑100 GTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCG > 2:1011870/1‑100 GTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCG > 2:1348510/1‑100 TTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGC > 2:566171/1‑100 TTGCGTCAGAATGTTGTCAGTAAAACGGGCCACCCCTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTatca > 1:3064213/1‑95 CACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATT > 2:1658340/1‑100 CCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAG > 1:2211723/1‑100 CGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGA > 1:1435895/1‑100 CGGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGA > 1:1442924/1‑100 GGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAA > 2:1678349/1‑100 GGCGGCGGACCTTCGCGTAAAATTTCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGA > 1:392337/1‑99 ggcCCGCCGCCGGATGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCACGCCTTGCTAGACACGTTACTACGCCAGGCAAGc < 1:2888494/96‑2 TCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCCTTGGTAGAAACGTTACTACGCCAGGCAAGACTG > 2:2888067/1‑100 TCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCCGGCAAGACTG > 2:183677/1‑100 TCCGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTG < 2:3032560/100‑1 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA < 2:563100/100‑1 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA < 2:907009/100‑1 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA > 2:2907038/1‑100 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA > 2:2212741/1‑100 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA > 1:4111182/1‑100 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA < 1:2774821/100‑1 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA < 1:1871107/100‑1 CGCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAAGGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGA > 1:3040620/1‑100 GCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAG > 2:2122360/1‑100 GCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAG < 2:602956/100‑1 GCCGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCAATGGTAGAAACGTTACTACGCCAGGCAAGACTGGAG > 1:2654363/1‑100 CGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA > 2:2658451/1‑100 CGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA > 2:796639/1‑100 CGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA > 1:1002838/1‑100 CGCCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA > 1:1002614/1‑100 AGTAACGTTTCTACCAATGCCTGCATACGCGCATTTTGCGTCAGAATGTTGTCAGTAAAACGAGCCACCACTTCCGGCGGCGGACCTTCGCGTAAAATTTCCGCCGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4637630‑4637524‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgccgcCGGAAGTGGTGGCTCGTTTTACTGACAACATTCTGACGCAAAATGCGCGTATGCAGGCATTGGTAGAAACGTTACTACGCCAGGCAAGACTGGAGAA > NC_000913/4637555‑4637651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |