New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	25710 =	NA (NA)	12 (0.080)	8/164	NT	NA	noncoding (1/86 nt)	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences
	?	NC_000913	25742 =	NA (NA)					noncoding (33/86 nt)	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences

TCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/25815‑25710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTA  >  NC_000913/25742‑25840                                                                                                                                                                                                               TCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCA                                                                                                           <  2:3196303/100‑1  CTTATATTTAAGGATTTTTGTCTTATGCTGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCAT                                                                                                          >  1:1931874/1‑100  CTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCAT                                                                                                          >  1:2754159/1‑100  CTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCAGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCAT                                                                                                          >  1:2444092/1‑100     ATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCG                                                                                                       >  2:450383/1‑100     ATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCG                                                                                                       >  2:2601803/1‑100      TATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGG                                                                                                      >  2:2783930/1‑100      TATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCGACGATTTCGCCGCAAGCTGTAGGCCGGATAAGCTGCGTCAGCATCGCATCCG                                                                                                       >  1:870190/1‑99      TATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTAGCCGGCCTACGATTTCGCAGCAATCTGTAGGTCGGATAAGATGCGTCAGCATCGCATCCGG                                                                                                      <  2:2329568/100‑1       ATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGC                                                                                                     >  2:1432970/1‑100       ATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGC                                                                                                     >  1:3033301/1‑100       ATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCAGGATAAGATGCGTCAGCATCGCATCCGGC                                                                                                     >  2:249505/1‑100       ATTTAAGGATTTTTGCCGGATGCGGCGTAAACCCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGC                                                                                                     >  2:4177093/1‑100                                              CCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGT                                                               >  1:283317/1‑99                                                                  AATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAA                                          >  2:1670396/1‑100                                                                         AGGCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAA                                   >  2:3501315/1‑100                                                                         AGGCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAA                                   >  2:2520176/1‑100                                                                         AGGCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAA                                   >  2:3670152/1‑100                                                                          GGCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAA                                  >  1:3876002/1‑100                                                                           GCCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAAT                                 >  2:806439/1‑100                                                                            CCGGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATA                                >  1:2127373/1‑100                                                                              GGATAAGCTGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATA                              >  2:2304101/1‑100                                                                              GGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATA                              >  1:138979/1‑100                                                                              GGATAAGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATA                              >  1:523312/1‑100                                                                                   AGATGCGTCAGCATCGCATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGC                         >  1:4025113/1‑100                                                                                                    ATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAA        <  2:1428446/100‑1                                                                                                     TCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAAT       <  2:2426496/100‑1                                                                                                     TCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAAT       >  2:3471705/1‑100                                                                                                      CCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATC      >  1:650420/1‑100                                                                                                      CCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATC      <  2:3677660/100‑1                                                                                                      CCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACATGCATGTCTGAA        >  1:3958846/1‑98                                                                                                       CGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCT     >  2:1236442/1‑100                                                                                                       CGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATC      <  1:1183217/99‑1                                                                                                        GGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTG    >  2:3435944/1‑100                                                                                                        GGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTG    <  1:3188343/100‑1                                                                                                        GGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTG    <  2:4342846/100‑1                                                                                                        GGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTG    <  1:2241158/100‑1                                                                                                        GGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTG    <  2:166312/100‑1                                                                                                         GCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGT   >  2:341227/1‑100                                                                                                         GCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACG‑CACATCCGGCAAAAACCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTA  <  1:3161561/100‑1                                                                                                          CCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTA  <  1:2952236/100‑1                                                                                                          CCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTA  >  2:49291/1‑100                                                                                                                                                                                                               TCTTATATTTAAGGATTTTTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTTCGCAGCAATCTGTAGGCCGGATAAGATGCGTCAGCATCGCATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/25815‑25710 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTA  >  NC_000913/25742‑25840

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.