BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	25710 =	NA (NA)	12 (0.080)	8/164	NT	NA	noncoding (1/86 nt)	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences
*	?	NC_000913	25742 =	NA (NA)	12 (0.080)	8/164	NT	NA	noncoding (33/86 nt)	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP2 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 219 total aligned reads displayed.

TCGGTGCGGCACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAC  >  NC_000913/25643‑25841

tttaaggatttttgccggatgcggcgtaaacgccttatccggcctacgatttcgcagcaatctgtagGCCGGATGCGATGCTGACGCATCTTATCCGGcc                                                                                                     >  1:3876002‑M1/68‑100 (MQ=255)

 ttaaggatttttgccggatgcggcgtaaacgccttatccggcctacgatttcgcagcaatctgtagGCCGGATGCGATGCTGACGCATCTTATCCGGCCt                                                                                                    >  2:2520176‑M1/67‑100 (MQ=255)

 ttaaggatttttgccggatgcggcgtaaacgccttatccggcctacgatttcgcagcaatctgtagGCCGGATGCGATGCTGACGCATCTTATCCGGCCt                                                                                                    >  2:3670152‑M1/67‑100 (MQ=255)

 ttaaggatttttgccggatgcggcgtaaacgccttatccggcctacgatttcgcagcaatctgtagGCCGGATGCGATGCTGACGCATCTTATCCGGCCt                                                                                                    >  2:3501315‑M1/67‑100 (MQ=255)

 cGGTGCGGCACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCt                                                                                                    <  2:2141337/100‑1 (MQ=255)

  ggTGCGGCACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTa                                                                                                   >  1:3149295/1‑100 (MQ=255)

    tGCGGCACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACa                                                                                                 <  2:204075/100‑1 (MQ=255)

         cACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGCAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCCACAGATtg                                                                                            >  1:2308422/1‑100 (MQ=255)

         cACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGATGACGCACCTTATCCGGACTAccact                                                                                              >  1:3782227/1‑94 (MQ=39)

            tGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATtgctg                                                                                         >  1:2016848/1‑100 (MQ=255)

             gATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGAGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATtgctgc                                                                                        <  1:3608422/100‑1 (MQ=255)

              aTTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCg                                                                                       <  2:1681023/100‑1 (MQ=255)

                tgtgCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGaa                                                                                     >  2:1090041/1‑100 (MQ=255)

                 gtgCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGaaa                                                                                    >  1:1714371/1‑100 (MQ=255)

                    cTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCg                                                                                 <  1:2859246/100‑1 (MQ=255)

                    cTGGAAGGTGTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCg                                                                                 <  1:951944/100‑1 (MQ=255)

                     tGGAAGGTTTTTTTCCTTCTTGTGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTCTCCGGCCTCCGGATTGCTGCGAAGTCGt                                                                                >  1:1444687/1‑100 (MQ=37)

                      ggAAGGTTTTTTGCCTTCTAGAGCGAAAAACCAATAATAACCCCTGCCGGATGCGATGCGGACGCATCGTACCCCGACTACCGATggctgctcaagc                                                                                  >  1:3677638/1‑91 (MQ=255)

                      ggAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTa                                                                               >  1:2464717/1‑100 (MQ=255)

                      ggAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTa                                                                               >  2:3819913/1‑100 (MQ=255)

                       gAAGGTTTTTTTTTTTTTATTTCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGATATCGt                                                                                >  1:1388040/1‑98 (MQ=21)

                       gAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAg                                                                              >  2:1852399/1‑100 (MQ=255)

                        aacgTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGACTGCTGCGAAATCGTAgg                                                                             <  1:293752/97‑1 (MQ=255)

                        aaGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAgg                                                                             >  1:1860006/1‑100 (MQ=255)

                             acgccttatccggcctacgatttcgcagcaatctgtagGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCgg                                                                         >  1:283317‑M1/39‑99 (MQ=255)

                                ttGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATaa                                                                     >  2:3370170/1‑100 (MQ=255)

                                 tgacaacTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAg                                                                    <  1:3573413/94‑1 (MQ=255)

                                  gCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg                                                                   <  2:1032974/100‑1 (MQ=255)

                                  gCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAgg                                                                   <  1:674330/100‑1 (MQ=255)

                                    cTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGc                                                                  >  1:4078584/1‑99 (MQ=255)

                                    cTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCg                                                                 >  2:437679/1‑100 (MQ=255)

                                     ttCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt                                                                >  2:4255239/1‑100 (MQ=255)

                                     ttCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGt                                                                <  1:2725546/100‑1 (MQ=255)

                                        tAGAGCGAAAAAACAATAATAACCCCTGCCGGATTCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTa                                                             <  1:3992794/100‑1 (MQ=255)

                                        tAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTa                                                             >  2:1720397/1‑100 (MQ=255)

                                        tAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTa                                                             <  2:1551375/100‑1 (MQ=255)

                                           agCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGAGAAGACGGTTAcg                                                           >  1:2621665/1‑99 (MQ=255)

                                            gCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                         >  1:1586418/1‑100 (MQ=255)

                                            gCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                         <  2:698377/100‑1 (MQ=255)

                                            gCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                         >  1:4171502/1‑100 (MQ=255)

                                             cGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccg                                                        <  2:2016856/100‑1 (MQ=255)

                                             cGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccg                                                        >  1:1068979/1‑100 (MQ=255)

                                              gAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccgc                                                       >  2:3614311/1‑100 (MQ=255)

                                              gAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccgc                                                       >  1:2147922/1‑100 (MQ=255)

                                               aaaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgcc                                                         <  1:2430684/97‑1 (MQ=255)

                                               aaaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa                                                      >  2:237585/1‑100 (MQ=255)

                                               aaaaaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCa                                                      <  2:156566/100‑1 (MQ=255)

                                                aaaaaGAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTAcgccg                                                        <  1:1611451/97‑1 (MQ=255)

                                                  aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATcc                                                   <  2:384534/100‑1 (MQ=255)

                                                  aaaCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATc                                                    >  1:1007702/1‑99 (MQ=255)

                                                    aCAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCgg                                                 >  2:4110952/1‑100 (MQ=255)

                                                     cAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                <  1:1150096/100‑1 (MQ=255)

                                                     cAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                <  2:1898287/100‑1 (MQ=255)

                                                      aataatAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                               <  1:2384522/100‑2 (MQ=25)

                                                      aataatAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                               <  2:2434840/100‑2 (MQ=25)

                                                      aataatAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                               <  2:1698032/100‑1 (MQ=255)

                                                       attataaACCCTGCCGTTTGCGATGTTGACGCATCTTATCCGGCCGACAGAGTGCTTCGAAATCGTAGGTCGTATAAGGCTTTTACGCTGCATCCGGc                                                <  1:895905/95‑1 (MQ=25)

                                                       ataataAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                              >  2:2477550/1‑100 (MQ=255)

                                                       ataataAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaa                                              <  2:599686/100‑1 (MQ=255)

                                                        taataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaa                                             <  1:3506904/100‑1 (MQ=255)

                                                          ataaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCaaaaa                                           >  2:82549/1‑100 (MQ=255)

                                                           taaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt                                          >  2:2060164/1‑100 (MQ=255)

                                                           taaACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAAt                                          >  2:2633258/1‑100 (MQ=255)

                                                            aaaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATc                                         >  2:397468/1‑100 (MQ=255)

                                                            aaaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATc                                         >  2:2873686/1‑100 (MQ=255)

                                                             aaCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATcc                                        <  2:4351383/100‑1 (MQ=255)

                                                              aCCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCt                                       <  2:3918632/100‑1 (MQ=255)

                                                               cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt                                      <  1:3914083/100‑1 (MQ=255)

                                                               cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt                                      <  1:1943691/100‑1 (MQ=255)

                                                               cccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCtt                                      <  2:514264/100‑1 (MQ=255)

                                                                ccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCagggtttatta                                     >  1:325620/1‑90 (MQ=255)

                                                                ccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTa                                     <  1:1023570/100‑1 (MQ=255)

                                                                ccTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTa                                     <  1:4198079/100‑1 (MQ=255)

                                                                   gccggataagatgcgtcagcatcgcatccggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat                                  >  2:806439‑M2/33‑100 (MQ=255)

                                                                   GCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAat                                  >  1:3033301‑M1/1‑100 (MQ=255)

                                                                     CGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAatat                                >  2:450383‑M1/1‑100 (MQ=255)

                                                                     CGGATGCGATGCTGACGCAGCTTATCCGGCCTACAGCTTGCGGCGAAATCGTCGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAata                                 >  1:870190‑M1/1‑99 (MQ=255)

                                                                         tgccatgcTGACGCATCGTATAGCGCGTCGTGATTTTTGCCAAATCATAGGCCCGATAAGGCATTTACTTCTTATCCGGCAAAAATCCTTAAATATAaga                            <  1:2171112/100‑1 (MQ=255)

                                                                         TGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga                            <  2:3196303‑M1/100‑1 (MQ=255)

                                                                          gggatgcTGACGCGTCTTATGCGGCCGACTTATTGCGGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAaga                            <  1:3292085/97‑1 (MQ=25)

                                                                          gcgatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAagag                           <  1:3956825/100‑1 (MQ=255)

                                                                           cgatgcTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGc                          >  1:2531405/1‑100 (MQ=255)

                                                                                cTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAAcc                     >  2:3526237/1‑100 (MQ=255)

                                                                                 tGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCt                    >  1:510796/1‑100 (MQ=255)

                                                                                  gACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTg                   <  1:588069/100‑1 (MQ=255)

                                                                                  gACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTg                   >  2:4293674/1‑100 (MQ=255)

                                                                                    cGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCa                 >  2:2576213/1‑100 (MQ=255)

                                                                                     gCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCAt                >  1:755075/1‑100 (MQ=255)

                                                                                       aTCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGt              >  1:4360956/1‑100 (MQ=255)

                                                                                         cTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCt            <  2:3566801/100‑1 (MQ=255)

                                                                                         cTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCt            <  2:2318300/100‑1 (MQ=255)

                                                                                            atccggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGaa         <  2:1428446‑M2/93‑1 (MQ=255)

                                                                                              ccggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATc       <  2:3677660‑M2/95‑1 (MQ=255)

                                                                                               cggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATc       <  1:1183217‑M2/95‑1 (MQ=255)

                                                                                               cggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCt      >  2:1236442‑M2/5‑100 (MQ=255)

                                                                                                ggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTg     >  2:3435944‑M2/4‑100 (MQ=255)

                                                                                                ggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTg     <  2:166312‑M2/97‑1 (MQ=255)

                                                                                                ggcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTg     <  1:3188343‑M2/97‑1 (MQ=255)

                                                                                                 gcCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGt    >  2:341227‑M2/3‑100 (MQ=255)

                                                                                                   cTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAc  <  1:2120664/100‑1 (MQ=255)

TCGGTGCGGCACTGATTGTGCTGGAAGGTTTTTTGCCTTCTAGAGCGAAAAAACAATAATAAACCCTGCCGGATGCGATGCTGACGCATCTTATCCGGCCTACAGATTGCTGCGAAATCGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAAAAATCCTTAAATATAAGAGCAAACCTGCATGTCTGAATCTGTAC  >  NC_000913/25643‑25841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.