| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 213636 = | NA (NA) | 6 (0.040) | 3/164 | NT | NA | noncoding (5/37 nt) | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 213669 = | NA (NA) | intergenic (+40/+9) | tilS/rof | tRNA(Ile)‑lysidine synthetase/modulator of Rho‑dependent transcription termination | |||||
TCTGGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/213741‑213636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC > NC_000913/213669‑213767 TCTGGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTA < 1:2045366/100‑1 GGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCC > 2:1538313/1‑100 GGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCC > 2:100492/1‑100 GGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCC > 1:4088616/1‑100 GGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCC > 1:3797745/1‑100 GGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATC > 1:2127273/1‑99 GGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGACGGATGCGACGTTTGATGCGTCTTATCC > 2:3888655/1‑100 GATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCGGGATGCGACGTTTGATGCGTCTTATCCG > 1:499807/1‑100 ATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCCGG > 2:2812216/1‑100 ATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCCGG > 2:2378096/1‑100 ATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCCGG > 2:1661464/1‑100 AAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTCTCCGGC > 1:1445407/1‑99 ATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGAGTCTTATaaggcttt > 2:2609425/1‑91 ACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCAACACCGTACCGCTTGCCAGGTGACTAAAagtgg > 1:3652187/1‑93 TTCGCCGGATGCGACGTTTGATGCGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATT > 1:1924375/1‑100 CGCCGGATGCGACGTTTGATGCGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTT > 2:2971972/1‑100 CGCCGGATGCGACGTTTGATGCGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACAGATTTCCGGGTGGCTAAAGCTGGTACTTT > 1:870823/1‑99 GCCGGATGCGACGTTTGATGCGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTA > 1:888266/1‑100 GCCGGATGCGACGTTTGATGCGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTA > 1:3067097/1‑100 ccTCCGGCGAAAGACAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAGGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGC > 2:2988707/3‑100 ATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCC < 1:3603971/100‑1 ATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCC > 1:50071/1‑100 ATCCGGCGAAAGTCAATCACGATTCGCTTACCACCACCGTACCGATTTCCGTGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCC < 2:3464281/100‑1 TCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCA > 2:2277563/1‑100 TCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCA > 2:1015098/1‑100 CGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGC > 2:639908/1‑100 CGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGC > 1:493336/1‑100 GGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCG < 1:1899111/100‑1 CGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC > 2:691691/1‑100 CGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC > 1:232724/1‑100 CGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC > 1:1694503/1‑100 CGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATCTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC > 1:1694837/1‑100 TCTGGATAAAATTACCAGCTTTAGCCACCCGGAAATCGGTACGGTGGTGGTAAGCGAATCCTGATTGACTTTCGCCGGATGCGACGTTTGATGCGTCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/213741‑213636‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC > NC_000913/213669‑213767 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |