New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 213636 =NA (NA)6 (0.040) 3/164 NT NA noncoding (5/37 nt) REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences REP15 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 213669 = NA (NA)intergenic (+40/+9) tilS/rof tRNA(Ile)‑lysidine synthetase/modulator of Rho‑dependent transcription termination

Only 100 of 195 total aligned reads displayed.

AGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC  >  NC_000913/213572‑213767
                                                                                                 |                                                                                                  
agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaa                                                                                                  <  2:4270548/100‑1 (MQ=255)
agGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaa                                                                                                  <  2:3020138/100‑1 (MQ=255)
 ggTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGaaa                                                                                                 <  1:3927492/100‑1 (MQ=255)
  gtgtGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAg                                                                                                <  2:4055798/100‑1 (MQ=255)
   tgtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                                                               >  2:1733062/1‑100 (MQ=255)
    gtgGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTc                                                                                              >  2:1999801/1‑100 (MQ=255)
     ccacttttagtcacctggcaagcggtacggtgttggtaagcgaatcctgattgactttcGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGt                                                                                               >  1:3652187‑M1/60‑98 (MQ=255)
      ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                                                            <  2:3825640/100‑1 (MQ=255)
      ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                                                            >  1:362300/1‑100 (MQ=255)
      ggCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCaa                                                                                            >  2:937735/1‑100 (MQ=255)
       gCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAAt                                                                                           >  1:902337/1‑100 (MQ=255)
       gCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAAt                                                                                           <  1:3231276/100‑1 (MQ=255)
        cTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATc                                                                                          >  2:342727/1‑100 (MQ=255)
          gAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAg                                                                                        <  2:893661/100‑1 (MQ=255)
           aaGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAgg                                                                                       <  2:725577/100‑1 (MQ=255)
             ggTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAt                                                                                     <  1:1964306/100‑1 (MQ=255)
              gTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGAtt                                                                                    >  2:1484433/1‑100 (MQ=255)
               tGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACTCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTc                                                                                   <  2:3784347/100‑1 (MQ=255)
                gagaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCg                                                                                  <  1:3150081/100‑1 (MQ=255)
                 agaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGc                                                                                 <  1:345514/100‑1 (MQ=255)
                  gaATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCt                                                                                >  2:1094645/1‑100 (MQ=255)
                     tGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCACTCAGGATTCGCTTac                                                                             >  1:2285443/1‑100 (MQ=255)
                     tGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTa                                                                              <  1:2795736/99‑1 (MQ=255)
                       gCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacca                                                                           <  2:459673/100‑1 (MQ=255)
                       gCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTacca                                                                           >  1:2700839/1‑100 (MQ=255)
                        cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                                                          <  2:2545789/100‑1 (MQ=255)
                        cGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccac                                                                          >  1:2508389/1‑100 (MQ=255)
                            aGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTaccaccacc                                                                      >  1:1036717/1‑100 (MQ=255)
                                 tGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTAcc                                                                 <  1:3101064/100‑1 (MQ=255)
                                  gTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGGATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCg                                                                <  1:2813046/100‑1 (MQ=255)
                                  gTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCg                                                                >  1:2225350/1‑100 (MQ=255)
                                   tCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGa                                                               >  2:1385002/1‑100 (MQ=255)
                                     tGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAt                                                              <  1:4000631/99‑1 (MQ=255)
                                        cAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTcc                                                          >  2:1083330/1‑100 (MQ=255)
                                        cAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTcc                                                          >  2:2320796/1‑100 (MQ=255)
                                        cAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTcc                                                          >  1:2428061/1‑100 (MQ=255)
                                        cAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTcc                                                          >  2:3556661/1‑100 (MQ=255)
                                          gAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCgg                                                        <  2:3972244/100‑1 (MQ=255)
                                           aaaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCggg                                                       <  2:851720/100‑1 (MQ=255)
                                            aaaCGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGt                                                      <  1:8451/100‑1 (MQ=255)
                                               cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGc                                                   <  1:1302571/100‑1 (MQ=255)
                                               cGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACAACCAGCGTACCGATTTACGGGttg                                                    >  2:2155648/1‑97 (MQ=255)
                                                 cTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTa                                                 <  1:1514262/100‑1 (MQ=255)
                                                 cTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAAAGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTa                                                 >  1:1708843/1‑100 (MQ=255)
                                                     nttAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGc                                             >  1:1382025/2‑100 (MQ=255)
                                                     gTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGc                                             <  1:3758488/100‑1 (MQ=255)
                                                        aaGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTgg                                          <  1:1535316/100‑1 (MQ=255)
                                                          gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa                                        >  1:202539/1‑100 (MQ=255)
                                                          gTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTa                                        >  2:3449435/1‑100 (MQ=255)
                                                            gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTaan                                      <  2:3915624/100‑2 (MQ=255)
                                                            gAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt                                      >  2:586888/1‑100 (MQ=255)
                                                             ttcgccggatgcgacgtttgatgcgtcttatccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt                                     >  1:1924375‑M2/37‑100 (MQ=255)
                                                             aaagccttATAAGACTCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAt                                      >  2:2609425‑M1/9‑99 (MQ=255)
                                                             aaaGCCGGATAAGACGCATCAAACGTCTTATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCTTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt                                     <  2:183038/100‑1 (MQ=255)
                                                             aaaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtt                                     <  1:1094641/100‑1 (MQ=255)
                                                              aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt                                    <  2:1511545/100‑1 (MQ=255)
                                                              aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt                                    <  2:1606302/100‑1 (MQ=255)
                                                              aaGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAttt                                    >  2:1838604/1‑100 (MQ=255)
                                                               cgccggatgcgacgtttgatgcgtcttatccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt                                   >  2:2971972‑M2/35‑100 (MQ=255)
                                                               cgccggatgcgacgtttgatgcgtcttatccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACAGATTTCCGGGTGGCTAAAGCTGGTACttt                                    >  1:870823‑M2/35‑99 (MQ=255)
                                                               aGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt                                   <  1:1081439/100‑1 (MQ=255)
                                                               aGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt                                   >  1:1663328/1‑100 (MQ=255)
                                                                gccggatgcgacgtttgatgcgtcttatccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTa                                  >  1:3067097‑M2/34‑100 (MQ=255)
                                                                GCCGGAGAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAAtttt                                   >  1:1445407‑M1/1‑99 (MQ=255)
                                                                 CCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTAt                                 >  2:1661464‑M1/1‑100 (MQ=255)
                                                                 CCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTAt                                 >  2:2378096‑M1/1‑100 (MQ=255)
                                                                   GGATAAGACGCATCAAACGTCGCATCCGTCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc                               >  2:3888655‑M1/1‑100 (MQ=255)
                                                                   GGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc                               >  1:3797745‑M1/1‑100 (MQ=255)
                                                                   GGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc                               >  1:4088616‑M1/1‑100 (MQ=255)
                                                                   GGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc                               >  2:1538313‑M1/1‑100 (MQ=255)
                                                                   GGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc                               >  2:100492‑M1/1‑100 (MQ=255)
                                                                    GATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATcc                               >  1:2127273‑M1/1‑99 (MQ=255)
                                                                        aGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACg                          <  2:2724349/100‑1 (MQ=255)
                                                                         gACGCATCAAGCGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGc                         >  2:632085/1‑100 (MQ=255)
                                                                         gACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGc                         >  1:1203905/1‑100 (MQ=255)
                                                                         gACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGc                         >  2:228202/1‑100 (MQ=255)
                                                                         gACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGAGTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGc                         >  2:2855684/1‑100 (MQ=255)
                                                                           cGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAg                       <  2:1314996/100‑1 (MQ=255)
                                                                             cATCAAACGTCGCATCCGGCGAGAGTCAATCAGGATTCGCTTACCACCCCCGTACCGATTTCCGGGTGGCGAAAGCTGGGAATTTTATCCAGACGCAGc                      >  1:2560748/1‑99 (MQ=255)
                                                                              aTCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTc                    >  1:1909525/1‑100 (MQ=255)
                                                                              aTCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTc                    >  1:3662090/1‑100 (MQ=255)
                                                                               ncAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTcg                   >  2:1181465/2‑100 (MQ=255)
                                                                                  aaCGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTCACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCgg                <  2:2954241/100‑1 (MQ=255)
                                                                                   aCGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGATGCAGCTCGCggg               <  2:2894906/100‑1 (MQ=255)
                                                                                    cGTCGCATCGGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCgg                <  1:969055/98‑1 (MQ=255)
                                                                                        gCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg          <  1:1498613/100‑1 (MQ=255)
                                                                                        gCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg          <  2:1626018/100‑1 (MQ=255)
                                                                                        gCATCCGGCGAAAGTCAATCAGGATGCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGtt             <  1:4309748/97‑1 (MQ=255)
                                                                                         cctccggcGAAAGACAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAGGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc         >  2:2988707‑M2/9‑100 (MQ=255)
                                                                                         cATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCg          >  2:4183464/1‑99 (MQ=255)
                                                                                         cATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc         >  1:2542489/1‑100 (MQ=255)
                                                                                         cATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGc         >  1:1828181/1‑100 (MQ=255)
                                                                                          atccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGcc        >  1:50071‑M2/8‑100 (MQ=255)
                                                                                          atccggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGcc        <  1:3603971‑M2/93‑1 (MQ=255)
                                                                                          atccggcGAAAGTCAATCACGATTCGCTTACCACCACCGTACCGATTTCCGTGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGcc        <  2:3464281‑M2/93‑1 (MQ=255)
                                                                                             cggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGc     >  1:493336‑M2/5‑100 (MQ=255)
                                                                                              ggcGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCg    <  1:1899111‑M2/97‑1 (MQ=255)
                                                                                               gCGAAAGTCAATCAGGATTCGCGTACCATCACCATTCCGATTTCCAGGTGGCTAAAGTTGGTAATTTTATCTAGACGCAGCTCGCGGGTTTCGCCAGCg    <  1:625133/99‑1 (MQ=255)
                                                                                                cGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGc  >  1:1694503‑M2/2‑100 (MQ=255)
                                                                                                cGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGc  >  2:691691‑M2/2‑100 (MQ=255)
                                                                                                 |                                                                                                  
AGGTGTGGCTGAAGGTGAGAATGGCGTAAGTTTTGTCTGGCAGAAAACGCTTAGTTAAGTGAAAGCCGGATAAGACGCATCAAACGTCGCATCCGGCGAAAGTCAATCAGGATTCGCTTACCACCACCGTACCGATTTCCGGGTGGCTAAAGCTGGTAATTTTATCCAGACGCAGCTCGCGGGTTTCGCCAGCGGC  >  NC_000913/213572‑213767

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.