| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 900753 = | NA (NA) | 7 (0.050) | 5/164 | NT | NA | noncoding (5/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 900783 = | NA (NA) | noncoding (35/87 nt) | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP83 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/900858‑900753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > NC_000913/900783‑900881 GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTA > 2:1167156/1‑100 CGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTAT > 2:1872199/1‑100 CGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTAT > 2:1597891/1‑100 CGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTAT > 1:4331311/1‑100 GTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATC < 1:2012833/100‑1 TACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCC > 2:4234504/1‑100 TACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCC > 2:2103925/1‑100 ATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC > 1:4313610/1‑100 ATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC > 1:4310052/1‑100 CTGTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGCCGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGC > 1:770758/1‑100 GTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGGTGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGA > 1:1408760/1‑100 GTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGTGCGTCTTATCAGACCTACATAA‑CCCCCCGGCGA > 2:1913219/1‑100 GTGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGA > 2:3273970/1‑100 TGCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAA > 1:725392/1‑100 GCCGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCCGCGAA > 1:3550640/1‑99 CGGATGCGGCGGGGACGCCTTATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGT > 2:1118746/1‑100 ATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAACCCCCCCGGCGAATGTACGCAGCCACATTAATT > 1:2672853/1‑97 ATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGC > 1:1791968/1‑100 ATCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGC < 2:2012841/100‑1 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCC > 1:571497/1‑100 TCCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCC < 2:3638852/100‑1 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG > 1:2240092/1‑100 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG > 2:3351315/1‑100 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG > 1:4039797/1‑100 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG < 1:874888/100‑1 CCGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCG < 1:3127561/100‑1 CGGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGT > 1:1351190/1‑100 GGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTT > 2:2552306/1‑100 GGCACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTT < 2:3495122/100‑1 CACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > 1:2485467/1‑100 CACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG < 1:683645/100‑1 CACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG < 2:857838/100‑1 GCGTACATTCGCCGGGGGGTTTTGTAGGTCTGATAAGACGCGCCAGCGTCGCATCAGACATCAGCACGGTGCCTGTGCCGGATGCGGCGGGGACGCCTTATCCGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/900858‑900753‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atccggcACAGGCACCGTGCTGATGTCTGATGCGACGCTGGCGCGTCTTATCAGACCTACAAAA‑CCCCCCGGCGAATGTACGCAGCCACATTAATTTCGCCGTTCG > NC_000913/900783‑900881 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |