BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1040547 =	NA (NA)	17 (0.120)	8/158	NT	NA	noncoding (5/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	1040579 =	NA (NA)	17 (0.120)	8/158	NT	NA	intergenic (+42/‑38)	cbdX/appA	putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

Only 100 of 188 total aligned reads displayed.

GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT  >  NC_000913/1040450‑1040646

ggagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGcc                                                                                                   >  1:2667509‑M1/98‑100 (MQ=255)

gcagattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGcc                                                                                                   >  2:225005‑M1/98‑100 (MQ=255)

gcagattgcggggttaacggaatcagaagagataaaaatgggattaagagcgctttcatcgagatgtttccgctgttcatatctgacattatggattGcc                                                                                                   <  2:1533495‑M1/3‑1 (MQ=255)

  agattgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTg                                                                                                 <  1:2840405‑M1/5‑1 (MQ=255)

     ttgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATg                                                                                              <  1:1348096‑M1/8‑1 (MQ=255)

      tgcggggttaacggaatcagaagagataaaaatgtgattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgc                                                                                             >  2:1579197‑M1/92‑100 (MQ=255)

      tgcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgc                                                                                             <  2:140189‑M1/9‑1 (MQ=255)

       gcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgcg                                                                                            <  1:337552‑M1/10‑1 (MQ=255)

       gcggggttaacggaatcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATgc                                                                                             <  1:893906‑M1/9‑1 (MQ=255)

        tttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcgg                                                                                           <  1:483351/100‑1 (MQ=255)

         ttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCTCCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc                                                                                          <  2:2847364/100‑1 (MQ=255)

         ttGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc                                                                                          >  2:1266847/1‑100 (MQ=255)

         ttGGTGCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggc                                                                                          <  1:2285096/100‑1 (MQ=255)

          tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggcg                                                                                         >  2:3239827/1‑100 (MQ=255)

          tGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggcg                                                                                         <  2:1691978/100‑1 (MQ=255)

           ggTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATgcggcg                                                                                         <  2:479713/99‑1 (MQ=255)

            gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       >  1:4270859/1‑100 (MQ=255)

            gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       <  2:3412131/100‑1 (MQ=255)

            gTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCa                                                                                       <  2:4108948/100‑1 (MQ=255)

             ttCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCAt                                                                                      <  2:4117090/100‑1 (MQ=255)

               cgttgGCATTTTGTTGATGTGTTCGCTCTTCACCCTTGTGTTGGTATGGCGGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCTGCGCATTa                                                                                    <  1:2733086/100‑1 (MQ=255)

                gtcgGCATTTTGTTGATGTGTTCGCTCTCCCCTCTTGTGTTGATATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAg                                                                                   <  2:850482/100‑1 (MQ=255)

                gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAg                                                                                   >  2:2947036/1‑100 (MQ=255)

                gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAg                                                                                   <  1:1107819/100‑1 (MQ=255)

                gtcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAg                                                                                   >  1:309920/1‑100 (MQ=255)

                 tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc                                                                                  >  1:1443062/1‑100 (MQ=255)

                 tcgGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAgc                                                                                  >  1:46868/1‑100 (MQ=255)

                   ggCATTCTGTAGATGTGTTCGTCCTCCGCTCTGGCGTGGGTAGGGCTGGACCCGCGTCTGAAAAGGTAGCGAATGTGGGCCTGATGCGGCGCATTAgca                                                                                 >  1:2561451/1‑99 (MQ=255)

                     atcagaagagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAgcatcg                                                                              >  2:2421850‑M1/77‑100 (MQ=255)

                      aTTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCAttctgccgtc                                                                             >  2:3270561/1‑92 (MQ=255)

                      aTTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTGAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGC                                                                             <  2:3092585‑M2/100‑1 (MQ=255)

                        tttGTTGATGTGTTCGCTCTCCACCCTTGTGTTTGTATGGCTGGTCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCA                                                                            <  1:1000899‑M2/99‑1 (MQ=255)

                           gttgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAG                                                                        >  2:1430243‑M2/1‑100 (MQ=255)

                            ttgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGG                                                                       <  2:3023721‑M2/100‑1 (MQ=255)

                            gagataaaaatgtgattaagatcgctttcatcgatattttttcgcttttcatatctgacattattgattGCCTGTTGGGGCGCATTAGCATCGCATCAg                                                                        >  1:3739736‑M1/70‑99 (MQ=255)

                            gagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  1:4037280‑M1/70‑100 (MQ=255)

                            gagataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAgg                                                                       >  2:1999261‑M1/70‑100 (MQ=255)

                             tgATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGC                                                                      <  1:247318‑M2/100‑1 (MQ=255)

                              gataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  1:1135856‑M1/68‑100 (MQ=255)

                              gataaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  2:2139334‑M1/68‑100 (MQ=255)

                              gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  1:3270669/1‑100 (MQ=255)

                              gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  2:353249/1‑100 (MQ=255)

                              gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                     >  2:1121037/1‑100 (MQ=255)

                                tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                   >  1:4264500/1‑100 (MQ=255)

                                taaaaatgggattaagatcgctttcatcgatatgtttccgcttttcatatctgacattattgattGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                   >  1:193462‑M1/66‑100 (MQ=255)

                                  tgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca                                                                 >  1:2872614/1‑100 (MQ=255)

                                  tgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca                                                                 >  2:2346737/1‑100 (MQ=255)

                                   gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                >  1:2236740/1‑100 (MQ=255)

                                   gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                >  2:1155149/1‑100 (MQ=255)

                                    ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                               <  2:1782598/100‑1 (MQ=255)

                                     tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata                                                              >  1:2357838/1‑100 (MQ=255)

                                      cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                             >  2:337553/1‑100 (MQ=255)

                                      cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                             <  1:1991195/100‑1 (MQ=255)

                                          ctcCACCCTTGTGTTGGTATGGCTTGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTc                                                         <  1:2587509/100‑1 (MQ=255)

                                           tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                        <  1:1194985/100‑1 (MQ=255)

                                            ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                       >  2:2617729/1‑100 (MQ=255)

                                             cACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                        <  2:643960/98‑1 (MQ=255)

                                               cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                    >  1:793441/1‑100 (MQ=255)

                                               cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                    >  2:1920510/1‑100 (MQ=255)

                                                     tgtTTGTATGGCTGGACCCTCGTCTGAAAATTTAACGAACGTAGCCCTGATGCGGCGCATTAGCATCGCATCAAGCAATCAATAATGTCAGATATGaaaa                                              <  1:2099262/100‑1 (MQ=255)

                                                     tgtTGGTGTGTCTGGACCCGCGGCTGAAAAGTTAACGAACGTAGGCCTGTTGCGGCGCACTAGCACACCATCAGCCACCTAATAATGTCCGATATGaaa                                               >  1:1208734/1‑99 (MQ=255)

                                                     tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGCTGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                              >  1:1007578/1‑100 (MQ=255)

                                                     tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                              >  1:750696/1‑100 (MQ=255)

                                                        tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                           <  1:4153140/100‑1 (MQ=255)

                                                         ggTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCgg                                          >  1:4053055/1‑100 (MQ=255)

                                                         ggTATGGCTAGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCgg                                          <  1:1263935/100‑1 (MQ=255)

                                                             tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                      <  2:807053/100‑1 (MQ=255)

                                                             tGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAAc                                      <  2:1648875/100‑1 (MQ=255)

                                                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     >  1:766659/1‑100 (MQ=255)

                                                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     >  2:2840421/1‑100 (MQ=255)

                                                              ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                     <  2:2216106/100‑1 (MQ=255)

                                                               gCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGGATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                        <  1:1824653/96‑1 (MQ=255)

                                                               gCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACat                                    >  2:3048541/1‑100 (MQ=255)

                                                                cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata                                   >  2:438885/1‑100 (MQ=255)

                                                                  ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                 <  1:2767916/100‑1 (MQ=255)

                                                                  ggACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATc                                 <  1:4323744/100‑1 (MQ=255)

                                                                   gACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCg                                >  2:101101/1‑100 (MQ=255)

                                                                      ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAGTAATGGCAGATATGAAAAGCGGAAACATAGCGATg                             <  1:2407834/100‑1 (MQ=255)

                                                                            cttaaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg                       <  1:2294786/97‑1 (MQ=255)

                                                                            cTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCTGATATGAAAAGCGGAAACATATCGATGAAAGCg                       >  1:2702556/1‑100 (MQ=255)

                                                                             tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg                       >  1:1884803/1‑99 (MQ=255)

                                                                             tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                      >  2:3591167/1‑100 (MQ=255)

                                                                             tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                      >  2:1207853/1‑100 (MQ=255)

                                                                              gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCctacgttcgttaacttttcagacgcgggtccagccataccaacaca                        <  1:2626839‑M2/97‑47 (MQ=255)

                                                                              gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                     >  1:898652/1‑100 (MQ=255)

                                                                              gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                     >  1:3188216/1‑100 (MQ=255)

                                                                                 aaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCctacgttcgttaacttttcagacgcgggtccagccataccaacacaagtgtg                  <  1:4199474‑M2/100‑53 (MQ=255)

                                                                                   gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCctacgttcgttaacttttcagacgcgggtccagccataccaacacaagggtgga                <  2:3498090‑M2/100‑55 (MQ=255)

                                                                                   gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                >  2:255512/1‑100 (MQ=255)

                                                                                     tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc              <  2:4131688/100‑1 (MQ=255)

                                                                                      aacgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATcc             >  2:4164568/1‑100 (MQ=255)

                                                                                           acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt        <  2:396133/100‑1 (MQ=255)

                                                                                             gTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttttt      <  2:3922552/100‑1 (MQ=255)

                                                                                              tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa     >  1:2062803/1‑100 (MQ=255)

                                                                                              tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa     <  1:3529860/100‑1 (MQ=255)

                                                                                                ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc   <  2:529831/100‑1 (MQ=255)

                                                                                                 gCCTGATGCGGCGCATTAGCATCGCATCAGGCctacgttcgttaacttttcagacgcgggtccagccataccaacacaagggtggagagcgaacacatca  <  1:3661583‑M2/100‑69 (MQ=255)

                                                                                                 gCCTGATGCGGCGCATTAGCATCGCATCAGGCctacgttcgttaacttttcagacgcgggtccagccataccaacacaagggtggagagcgaacacatc   <  1:671444‑M2/99‑68 (MQ=255)

                                                                                                 GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct  >  2:1299526‑M1/1‑100 (MQ=255)

                                                                                                 GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct  >  2:2077853‑M1/1‑100 (MQ=255)

GTATTTACTTTGGTTCGTCGGCATTTTGTTGATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCT  >  NC_000913/1040450‑1040646

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.