BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1040547 =	NA (NA)	17 (0.120)	8/158	NT	NA	noncoding (5/36 nt)	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP89 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	1040579 =	NA (NA)	17 (0.120)	8/158	NT	NA	intergenic (+42/‑38)	cbdX/appA	putative cytochrome bd‑II oxidase subunit/phosphoanhydride phosphorylase

Only 100 of 182 total aligned reads displayed.

GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCATT  >  NC_000913/1040480‑1040678

gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                                                     >  1:3270669/1‑100 (MQ=255)

gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                                                     >  1:862790/1‑100 (MQ=255)

gATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGca                                                                                                     >  2:1121037/1‑100 (MQ=255)

  tgtgTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaat                                                                                                   <  2:1579923/100‑1 (MQ=255)

    tgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca                                                                                                 >  2:1516237/1‑100 (MQ=255)

    tgtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatca                                                                                                 >  1:2872614/1‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                                >  1:2236740/1‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                                >  1:277132/1‑100 (MQ=255)

     gtTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaa                                                                                                >  2:1155149/1‑100 (MQ=255)

      ttCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGcaatcaat                                                                                               <  2:210962/100‑1 (MQ=255)

       tCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaata                                                                                              >  1:2357838/1‑100 (MQ=255)

        cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                                                             >  2:562297/1‑100 (MQ=255)

        cGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCaataa                                                                                             >  2:337553/1‑100 (MQ=255)

          ctctCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATg                                                                                           <  1:2606874/100‑1 (MQ=255)

             tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                                                        <  1:1194985/100‑1 (MQ=255)

             tcCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCa                                                                                        <  1:1155145/100‑1 (MQ=255)

              ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                       <  2:2449141/100‑1 (MQ=255)

              ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                       >  2:2617729/1‑100 (MQ=255)

              ccACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAg                                                                                       <  2:849272/100‑1 (MQ=255)

               cACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa                                                                                      >  2:177063/1‑100 (MQ=255)

               cACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGa                                                                                      <  2:429684/100‑1 (MQ=255)

                 cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                                                    >  1:1254451/1‑100 (MQ=255)

                 cccTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGata                                                                                    <  2:46868/100‑1 (MQ=255)

                   cTTGTGTTGGTATGGCTGGACCCGCGACTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCACGAGGCAATCAATAATGTCAGATATg                                                                                  >  1:1400257/1‑100 (MQ=255)

                    ttGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGa                                                                                 <  2:2958785/100‑1 (MQ=255)

                       tgtTTGTATGGCTGGACCCTCGTCTGAAAATTTAACGAACGTAGCCCTGATGCGGCGCATTAGCATCGCATCAAGCAATCAATAATGTCAGATATGaaaa                                                                              <  1:2099262/100‑1 (MQ=255)

                       tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGCTGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                              >  1:1007578/1‑100 (MQ=255)

                       tgtTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGaaaa                                                                              >  1:750696/1‑100 (MQ=255)

                          tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                                                           <  1:4153140/100‑1 (MQ=255)

                          tGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCg                                                                           <  1:3804075/100‑1 (MQ=255)

                           ggTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCgg                                                                          >  1:4053055/1‑100 (MQ=255)

                             tATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGaa                                                                        <  2:3918198/100‑1 (MQ=255)

                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                     <  2:2216106/100‑1 (MQ=255)

                                ggCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACa                                                                     >  1:766659/1‑100 (MQ=255)

                                  cTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACata                                                                   >  2:438885/1‑100 (MQ=255)

                                      aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                                                               <  2:4053084/100‑1 (MQ=255)

                                      aCCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGa                                                               <  2:793444/100‑1 (MQ=255)

                                        ccGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAGTAATGGCAGATATGAAAAGCGGAAACATAGCGATg                                                             <  1:2407834/100‑1 (MQ=255)

                                            gTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGaaa                                                          >  1:4154155/1‑99 (MQ=255)

                                              cttaaaaGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg                                                       <  1:2294786/97‑1 (MQ=255)

                                              cTGAAAAGTTAACGAACGTAGGCATTATGTGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGc                                                        <  1:1977268/99‑1 (MQ=255)

                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCg                                                       >  1:1884803/1‑99 (MQ=255)

                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                      >  2:3591167/1‑100 (MQ=255)

                                               tGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGa                                                      >  2:1207853/1‑100 (MQ=255)

                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                                                     >  2:3131806/1‑100 (MQ=255)

                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                                                     >  1:3188216/1‑100 (MQ=255)

                                                gAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGAt                                                     >  1:898652/1‑100 (MQ=255)

                                                    aGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTa                                                 <  2:2367718/100‑1 (MQ=255)

                                                     gTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTaa                                                >  2:255512/1‑100 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              >  2:3030126/1‑100 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              >  2:1814863/1‑100 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              >  2:1026812/1‑100 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              >  2:3958831/1‑100 (MQ=255)

                                                       tAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              <  1:1344802/100‑1 (MQ=255)

                                                        cattattgattgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATc                                              >  1:460297‑M2/44‑99 (MQ=255)

                                                         acgaacgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATccc                                            <  1:3112484/100‑1 (MQ=255)

                                                             acgTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCAttt                                        <  1:1207848/100‑1 (MQ=255)

                                                                tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa                                     >  1:2062803/1‑100 (MQ=255)

                                                                tAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa                                     <  2:1669205/100‑1 (MQ=255)

                                                                attgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa                                     >  1:193462‑M2/36‑100 (MQ=255)

                                                                 ttgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAt                                    >  1:78451‑M2/35‑100 (MQ=255)

                                                                  tgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   >  1:2436950‑M2/34‑100 (MQ=255)

                                                                  tgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   >  2:2139334‑M2/34‑100 (MQ=255)

                                                                  tgcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   >  1:1135856‑M2/34‑100 (MQ=255)

                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGGGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTa                                     >  2:3073894/1‑98 (MQ=255)

                                                                  ggCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtc                                   >  2:3467507/1‑100 (MQ=255)

                                                                   gcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                  >  1:1119131‑M2/33‑100 (MQ=255)

                                                                   gcctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                  >  2:1329908‑M2/33‑100 (MQ=255)

                                                                   GCCTGCTGCGGCGCATTAGCATCGGTTTAGGCAATCAATATTGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTttagc                                   >  1:2695225‑M1/1‑97 (MQ=255)

                                                                   GCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtct                                  >  2:1299526‑M1/1‑100 (MQ=255)

                                                                    cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                 >  1:4037280‑M2/32‑100 (MQ=255)

                                                                    cctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                 >  2:1922067‑M2/32‑100 (MQ=255)

                                                                    CCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTAtctc                                 <  2:2005571‑M1/100‑1 (MQ=255)

                                                                     ctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                                >  1:720606‑M2/31‑100 (MQ=255)

                                                                     ctgatgcgatgctaatgcgccgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                                >  1:2758511‑M2/31‑100 (MQ=255)

                                                                     CTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATctct                                <  1:3595034‑M1/100‑1 (MQ=255)

                                                                      TGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtctt                               <  1:1638792‑M1/100‑1 (MQ=255)

                                                                       GATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttc                              >  1:1784176‑M1/1‑100 (MQ=255)

                                                                       GATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttc                              >  2:4163660‑M1/1‑100 (MQ=255)

                                                                        ATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCtcttct                             >  1:1516232‑M1/1‑100 (MQ=255)

                                                                         TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTg                            >  1:1072861‑M1/1‑100 (MQ=255)

                                                                         TGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTg                            >  1:1999573‑M1/1‑100 (MQ=255)

                                                                            GGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGAtt                         <  1:4277355‑M1/100‑1 (MQ=255)

                                                                             gcgcATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTc                        >  1:3690494/1‑100 (MQ=255)

                                                                               gcATTAGCATCGCATCAGGTAATCAATAATGTCATATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCg                      <  1:1886948/100‑1 (MQ=255)

                                                                                cATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGt                     <  2:2555680/100‑1 (MQ=255)

                                                                                cATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGt                     >  2:51336/1‑100 (MQ=255)

                                                                                 aTTAGCATCGCAGCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTcc                       <  1:342224/97‑1 (MQ=255)

                                                                                   tAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTaa                  >  2:3578362/1‑100 (MQ=255)

                                                                                   tAGCATCGCATCAGGCAATCAAAAATGTCAGATATGAAAAGAGGAAACATATACAACCAAGCGATCTTACCCCCATTTTTATCCATTCAGATTCCGTTa                   <  1:3674157/99‑1 (MQ=255)

                                                                                       atcgcatcAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAAccc               <  1:1837244/99‑1 (MQ=255)

                                                                                         cgcatcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGc            <  1:337552‑M2/90‑1 (MQ=255)

                                                                                           catcaggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCaa          >  1:530696‑M2/9‑100 (MQ=255)

                                                                                              caggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCt       <  1:2840405‑M2/95‑1 (MQ=255)

                                                                                               aggcAATCAATTATGTCAGTTATGAAAAGCGGTACCATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATc        <  1:906551‑M2/94‑1 (MQ=255)

                                                                                                ggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAAtctcc     >  1:2667509‑M2/4‑98 (MQ=255)

                                                                                                ggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGc     >  2:225005‑M2/4‑100 (MQ=255)

                                                                                                ggcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGc     <  2:3266008‑M2/97‑1 (MQ=255)

                                                                                                ggCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTTTTTTTTTTTTTTCCGTTAAACCCCCAATc        >  1:4332302/1‑97 (MQ=255)

                                                                                                 gcAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCa    >  2:1569073‑M2/3‑100 (MQ=255)

GATGTGTTCGCTCTCCACCCTTGTGTTGGTATGGCTGGACCCGCGTCTGAAAAGTTAACGAACGTAGGCCTGATGCGGCGCATTAGCATCGCATCAGGCAATCAATAATGTCAGATATGAAAAGCGGAAACATATCGATGAAAGCGATCTTAATCCCATTTTTATCTCTTCTGATTCCGTTAACCCCGCAATCTGCATT  >  NC_000913/1040480‑1040678

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.