New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3277819 =NA (NA)10 (0.070) 5/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 217 total aligned reads displayed.

CGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGG  >  NC_000913/3277720‑3277918
                                                                                                   |                                                                                                   
atgatcattgttgatgaaggcattcctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccg                                                                                                     >  2:1179623‑M1/100‑100 (MQ=255)
 tgatcattgttgatgaaggcattcctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgc                                                                                                    <  2:1625547‑M1/2‑1 (MQ=255)
 gTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCccgc                                                                                                    <  2:3809300/100‑1 (MQ=255)
 gTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCccg                                                                                                     >  1:3439737/1‑99 (MQ=255)
    ttCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGa                                                                                                 <  2:4311877/100‑1 (MQ=255)
        gCAAACTGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTTTTCACAATGCCCCCCGAACg                                                                                              >  1:811201/1‑99 (MQ=255)
        gCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGc                                                                                             >  2:3206019/1‑100 (MQ=255)
        gCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGc                                                                                             >  2:3330177/1‑100 (MQ=255)
          aaaaTGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCAt                                                                                           >  1:116814/1‑100 (MQ=255)
            aaTGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTc                                                                                         <  2:3639778/100‑1 (MQ=255)
             aTGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCg                                                                                        >  2:4007134/1‑100 (MQ=255)
               gTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCACACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACCATGCCCGCCGAACGCATTCgtg                                                                                      <  2:137413/100‑1 (MQ=255)
                ttAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCgtgt                                                                                     >  2:523284/1‑100 (MQ=255)
                  aaaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTg                                                                                   <  1:154992/100‑1 (MQ=255)
                  aaaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTg                                                                                   <  2:2710933/100‑1 (MQ=255)
                  aaaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTg                                                                                   >  2:265282/1‑100 (MQ=255)
                  aaaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTg                                                                                   >  2:4108553/1‑100 (MQ=255)
                  aaaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTg                                                                                   <  2:2357510/100‑1 (MQ=255)
                   aaaaGAGGACATCCTCCTGCCGACTGGGGAACCCTCACCCGAGAAACACAAGAAACCCCTTGATCGTGTTCACAATGCCCGCCGAACGCATTCgta                                                                                      >  1:1314467/1‑95 (MQ=255)
                   aaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGa                                                                                  >  2:1884289/1‑100 (MQ=255)
                   aaaaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGa                                                                                  <  1:3224507/100‑1 (MQ=255)
                     aaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAATCCCATTGATGGTGTTCACAATGCCCGCCGAACGCAGTCGTGTTTAcg                                                                                <  1:2382885/100‑2 (MQ=255)
                     aaGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGAcc                                                                                <  1:334674/100‑1 (MQ=255)
                         ggACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCg                                                                            >  2:672141/1‑100 (MQ=255)
                          gACATCCTCCTGCCGACTGGGACACCCCCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCATGTTGACCAGCgg                                                                           <  1:2118225/100‑1 (MQ=255)
                          gACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTTACAATGCCCGCCGAACGCATTCGTGTTGACCAGCgg                                                                           <  2:3097958/100‑1 (MQ=255)
                           gcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCggg                                                                          >  1:1534789‑M1/73‑100 (MQ=255)
                           aCATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCggg                                                                          <  2:3439755/100‑1 (MQ=255)
                            cATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGc                                                                         >  2:2015498/1‑100 (MQ=255)
                             aTCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCa                                                                        <  1:3020127/100‑1 (MQ=255)
                             aTCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCa                                                                        <  2:1385415/100‑1 (MQ=255)
                             aTCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCa                                                                        <  2:4334180/100‑1 (MQ=255)
                              tcctccTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCAt                                                                       >  2:424259/1‑100 (MQ=255)
                               atagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATc                                                                      >  1:1234836‑M1/69‑100 (MQ=255)
                                  cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                   >  2:1583523/1‑100 (MQ=255)
                                  cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                   >  2:4367663/1‑100 (MQ=255)
                                    tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCttt                                                                  <  1:3040480/99‑1 (MQ=255)
                                    tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGACATCCTTtc                                                                 >  1:3177286/1‑100 (MQ=255)
                                    tGCCGACTGGGAAACCCTCAACCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGAGCATCCt                                                                    >  1:2693795/1‑97 (MQ=255)
                                     gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                >  2:2875774/1‑100 (MQ=255)
                                     gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                <  1:3801359/100‑1 (MQ=255)
                                     gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                >  2:3549466/1‑100 (MQ=255)
                                      ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                               <  2:2550402/100‑1 (MQ=255)
                                       cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCa                                                              <  2:788224/100‑1 (MQ=255)
                                       cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCa                                                              >  2:3026909/1‑100 (MQ=255)
                                       cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTCCACAATGCCCGCCGAACGCATTCGTGTTGAACAGCGGGCATCCTTTCTCa                                                              >  1:1690229/1‑100 (MQ=255)
                                           gactgcgaaaggttggggtggaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcc                                                          >  1:147767‑M1/57‑100 (MQ=255)
                                            gggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTccc                                                         >  2:650893/1‑100 (MQ=255)
                                             ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                        >  2:1531789/1‑100 (MQ=255)
                                              gAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTCCTCACAATGCCCGCCGAACGCATCAGTGTTGACCAGCAGACACCCTCTCTcccccccc                                                        >  1:3913596/1‑99 (MQ=255)
                                                aaCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAc                                                     <  1:419547/100‑1 (MQ=255)
                                                aaCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAc                                                     <  2:316163/100‑1 (MQ=255)
                                                  cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                   >  2:1167004/1‑100 (MQ=255)
                                                   ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                  >  2:928350/1‑100 (MQ=255)
                                                   ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                  >  2:2175913/1‑100 (MQ=255)
                                                   ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                  >  1:1379627/1‑100 (MQ=255)
                                                     tCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGaa                                                <  1:587956/100‑1 (MQ=255)
                                                       aCCCAAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGTCGAACGCATTCGTGTTCACCAGCGAGCATCCTTTCTCACTCCCCGACCAGAATc                                              <  1:477017/100‑1 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                             >  2:1321110/1‑100 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                             >  2:3952740/1‑100 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                             <  2:2618633/100‑1 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                             >  2:544701/1‑100 (MQ=255)
                                                        cccGAGAAACAGAAGAAACCCAGTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                             >  1:2556556/1‑100 (MQ=255)
                                                          cGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACt                                           <  1:4014831/100‑1 (MQ=255)
                                                          cGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACt                                           <  2:833266/100‑1 (MQ=255)
                                                             ataaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCa                                        <  2:4111429/98‑1 (MQ=255)
                                                              aaaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCaa                                       <  2:2499535/100‑1 (MQ=255)
                                                                 nagaagaAACCCATTGATGGTGTTCACAATACCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATGACTTCAAccc                                    >  1:2896690/2‑100 (MQ=255)
                                                                  agaagaAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAcccc                                   >  1:3417568/1‑100 (MQ=255)
                                                                   gaagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCa                                  >  2:1713411/1‑100 (MQ=255)
                                                                    aagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAg                                 <  1:1932275/100‑1 (MQ=255)
                                                                     agaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGc                                <  2:1404540/100‑1 (MQ=255)
                                                                     agaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGc                                >  2:2714602/1‑100 (MQ=255)
                                                                        aaCCCATTGATGGTGTTCACAATGCCCTCCGAACGCATTCGTGTTGACCATCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCt                              <  1:977880/99‑1 (MQ=255)
                                                                          cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTc                           >  2:3312176/1‑100 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  2:287200/100‑1 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  1:1591807/100‑1 (MQ=255)
                                                                            cATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGc                         <  1:1572808/100‑1 (MQ=255)
                                                                              ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCa                        <  2:224670/99‑1 (MQ=255)
                                                                              ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAg                       <  1:4341737/100‑1 (MQ=255)
                                                                              ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAg                       <  1:2217455/100‑1 (MQ=255)
                                                                                gATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTc                     >  1:2329333/1‑100 (MQ=255)
                                                                                  tGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCt                   <  2:279224/100‑1 (MQ=255)
                                                                                   ggTGTTCACAATGCCCGCCGCACTCATTCGAGTTGACCAGCGGGCCTCCTTTATCACTCTCCTACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCtt                  >  1:1493940/1‑100 (MQ=255)
                                                                                    gggtTCACAATGCGCGCCGAACGCATGCGTGTTGACCAGCGGGCAGCCTTTCTCACTCCCCGACCAGAATCACTTCGACCCCAGCTTTTCGCAGTc                     <  1:4153567/94‑1 (MQ=255)
                                                                                      gtTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCa               >  1:546096/1‑100 (MQ=255)
                                                                                       ttCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg              >  1:69205/1‑100 (MQ=255)
                                                                                       ttCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg              <  1:928346/100‑1 (MQ=255)
                                                                                        tgacaATGCGCGCCGAAGGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCACCGAACAGAATCACTTAAACCCCAGCGTTTAGCAGTACTTACAg              >  1:3624145/3‑99 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             <  1:1003503/100‑1 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             <  1:2632775/100‑1 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             <  1:4285320/100‑1 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             <  1:794668/100‑1 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             >  2:1071163/1‑100 (MQ=255)
                                                                                        tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg             >  2:1931489/1‑100 (MQ=255)
                                                                                         cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc            >  2:1637895/1‑100 (MQ=255)
                                                                                         cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACGTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc            <  1:1083826/100‑1 (MQ=255)
                                                                                              tgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATcc       <  1:4106393‑M1/95‑1 (MQ=255)
                                                                                              tgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATcc       <  2:2283793‑M1/95‑1 (MQ=255)
                                                                                                   GCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAgg  >  2:504422‑M1/1‑100 (MQ=255)
                                                                                                   |                                                                                                   
CGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGG  >  NC_000913/3277720‑3277918

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.