New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3277819 =NA (NA)10 (0.070) 5/162 NT NA noncoding (1/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3277844 = NA (NA)noncoding (26/29 nt) REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences REP238 (repetitive extragenic palindromic) element; contains 1 REP sequences

Only 100 of 216 total aligned reads displayed.

GGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCATG  >  NC_000913/3277745‑3277943
                                                                                                   |                                                                                                   
ctgcggatagcctggaaggactgcgaaagggtggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgattgcgttcggcg                                                                                                     <  1:4200354‑M2/1‑1 (MQ=255)
ctgcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcg                                                                                                     >  1:693603‑M2/100‑100 (MQ=255)
 gACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTTACAATGCCCGCCGAACGCATTCGTGTTGACCAGCgg                                                                                                    <  2:3097958/100‑1 (MQ=255)
  gcggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCggg                                                                                                   >  2:2874826‑M1/73‑100 (MQ=255)
   cATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGc                                                                                                  >  2:4402428/1‑100 (MQ=255)
   cATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGc                                                                                                  >  2:2015498/1‑100 (MQ=255)
    ggatagcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccgctggtcaacacgaatgcgttcggcGGGCa                                                                                                 >  1:958813‑M2/96‑100 (MQ=255)
    aTCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCa                                                                                                 <  1:3020127/100‑1 (MQ=255)
    aTCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCa                                                                                                 <  2:1385415/100‑1 (MQ=255)
      cctcctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATc                                                                                               <  1:1488077/100‑1 (MQ=255)
         gcctggaaggactgcgaaaggctggggttgaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                                            >  2:3602270‑M1/66‑100 (MQ=255)
         cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                                            >  2:4367663/1‑100 (MQ=255)
         cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCtt                                                                                            >  2:1583523/1‑100 (MQ=255)
         cctGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCACCAGGCATCCtt                                                                                            >  1:1510818/1‑100 (MQ=255)
           tGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCttt                                                                                           <  1:3040480/99‑1 (MQ=255)
            gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                                         >  2:2875774/1‑100 (MQ=255)
            gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                                         <  1:3801359/100‑1 (MQ=255)
            gCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtct                                                                                         >  2:3549466/1‑100 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                        <  1:1583518/100‑1 (MQ=255)
             ccGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTtctc                                                                                        <  1:3526310/100‑1 (MQ=255)
              cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCa                                                                                       >  2:3026909/1‑100 (MQ=255)
              cGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTCCACAATGCCCGCCGAACGCATTCGTGTTGAACAGCGGGCATCCTTTCTCa                                                                                       >  1:1690229/1‑100 (MQ=255)
               gACTGGGAAACCGTCACCCGATAAACAGAAGAAACCCATTGATAGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCAGCCTTTCTCa                                                                                       <  1:1969296/99‑1 (MQ=255)
                 cTGGGAAACCCTCACCCGAGGAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATCCGTGCTGACCAACGGGCATCCTTCCTCAcgc                                                                                    >  1:2677110/1‑98 (MQ=255)
                 cTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATCCGTGCTGACCAGCGGGCATCCTTCCCCAccc                                                                                    >  1:801649/1‑98 (MQ=255)
                  gactgcgaaaggttggggtggaagtgattctggtcggggagtgagaaaggatgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcc                                                                                   >  1:147767‑M1/57‑100 (MQ=255)
                    ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                                                 >  2:27128/1‑100 (MQ=255)
                    ggAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTcccc                                                                                 >  2:1531789/1‑100 (MQ=255)
                       aaCCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAc                                                                              <  1:419547/100‑1 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGAcc                                                                             <  2:3981112/99‑1 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                                            >  2:1167004/1‑100 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                                            >  2:4140667/1‑100 (MQ=255)
                         cccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCa                                                                            >  2:1906287/1‑100 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                           >  2:275762/1‑100 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                           >  1:1379627/1‑100 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                           <  1:1635993/100‑1 (MQ=255)
                          ccTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAg                                                                           >  2:928350/1‑100 (MQ=255)
                           cTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGa                                                                          <  2:2316927/100‑1 (MQ=255)
                            tCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGaa                                                                         <  1:587956/100‑1 (MQ=255)
                              aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATc                                                                       <  2:838774/100‑1 (MQ=255)
                              aCCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATc                                                                       <  1:3638887/100‑1 (MQ=255)
                              aCCCAAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGTCGAACGCATTCGTGTTCACCAGCGAGCATCCTTTCTCACTCCCCGACCAGAATc                                                                       <  1:477017/100‑1 (MQ=255)
                               cccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                                                      <  2:2618633/100‑1 (MQ=255)
                               cccGAGAAACAGAAGAAACCCAGTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCa                                                                      >  1:2556556/1‑100 (MQ=255)
                                ccGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCAc                                                                     <  2:3268091/100‑1 (MQ=255)
                                 cGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACt                                                                    >  2:1340285/1‑100 (MQ=255)
                                    gaAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCa                                                                 >  2:803396/1‑100 (MQ=255)
                                     aaaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCaa                                                                <  2:2499535/100‑1 (MQ=255)
                                      aaCAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAc                                                               <  2:709435/100‑1 (MQ=255)
                                        nagaagaAACCCATTGATGGTGTTCACAATACCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATGACTTCAAccc                                                             >  1:2896690/2‑100 (MQ=255)
                                         agaagaAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAcccc                                                            <  2:539815/100‑1 (MQ=255)
                                         agaagaAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAAcccc                                                            >  2:1003507/1‑100 (MQ=255)
                                          gaagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCa                                                           <  2:2235952/100‑1 (MQ=255)
                                          gaagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCa                                                           >  2:1713411/1‑100 (MQ=255)
                                          gaagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCa                                                           >  2:4260809/1‑100 (MQ=255)
                                           aagaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAg                                                          <  1:236970/100‑1 (MQ=255)
                                            agaaACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGc                                                         <  2:1404540/100‑1 (MQ=255)
                                                 cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTc                                                    <  1:3206002/100‑1 (MQ=255)
                                                 cccATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTc                                                    >  2:3312176/1‑100 (MQ=255)
                                                     ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAg                                                <  1:2217455/100‑1 (MQ=255)
                                                     ttGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAg                                                <  1:4341737/100‑1 (MQ=255)
                                                      tGATGGTGTTCACAATGCCCGCCGATCGCCTTCGTGTTGACCAGCGGGCATCCGTTCTCACTCCCCGACCAGAATCACTTCAGCCCGAGCCGTTTGc                                                  >  1:3381521/1‑97 (MQ=255)
                                                           gggtTCACAATGCGCGCCGAACGCATGCGTGTTGACCAGCGGGCAGCCTTTCTCACTCCCCGACCAGAATCACTTCGACCCCAGCTTTTCGCAGTc                                              <  1:4153567/94‑1 (MQ=255)
                                                             gtTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCa                                        >  1:546096/1‑100 (MQ=255)
                                                              ttCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAg                                       <  1:928346/100‑1 (MQ=255)
                                                               tCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAgg                                      <  1:1003503/100‑1 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                     >  2:1637895/1‑100 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                     <  2:546098/100‑1 (MQ=255)
                                                                cacaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACGTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                     <  1:1083826/100‑1 (MQ=255)
                                                                aaggatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGc                                     >  1:3827460‑M2/36‑100 (MQ=255)
                                                                 acaATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCt                                    >  1:1566184/1‑100 (MQ=255)
                                                                  caATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTa                                   <  1:3432825/100‑1 (MQ=255)
                                                                   gatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt                                  >  1:1234836‑M2/33‑100 (MQ=255)
                                                                   gatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt                                  >  2:1127895‑M2/33‑100 (MQ=255)
                                                                   gatgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTAt                                  >  1:443935‑M2/33‑100 (MQ=255)
                                                                    atgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATc                                 >  2:1912163‑M2/32‑100 (MQ=255)
                                                                    atgcccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATc                                 >  2:665871‑M2/32‑100 (MQ=255)
                                                                     tgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATcc                                <  2:2283793‑M1/95‑1 (MQ=255)
                                                                     tgcccGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATcc                                <  1:4106393‑M1/95‑1 (MQ=255)
                                                                       cccgctggtcaacacgaatgcgttcggcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGc                              >  1:1534789‑M2/29‑100 (MQ=255)
                                                                             gAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAAt                        <  1:672139/100‑1 (MQ=255)
                                                                              aaCGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATg                       <  1:1321105/100‑1 (MQ=255)
                                                                               aCGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGc                      >  2:1248619/1‑100 (MQ=255)
                                                                                cGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCTCTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGcc                     <  2:4111191/100‑1 (MQ=255)
                                                                                cGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGcc                     >  1:753281/1‑100 (MQ=255)
                                                                                 gCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCt                    <  2:601315/100‑1 (MQ=255)
                                                                                 gCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCt                    <  2:2083989/100‑1 (MQ=255)
                                                                                  cATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCtt                   >  1:1875144/1‑100 (MQ=255)
                                                                                    ttCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtca                 <  1:424257/100‑1 (MQ=255)
                                                                                      cGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcatc               >  1:3952879/1‑100 (MQ=255)
                                                                                       gtgtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcatca              <  2:2167081/100‑1 (MQ=255)
                                                                                       gtgtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcatca              >  2:767321/1‑100 (MQ=255)
                                                                                       gtgtTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTtcatca              <  1:3598862/100‑1 (MQ=255)
                                                                                           tGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATcaacaa          <  1:4086245/100‑1 (MQ=255)
                                                                                            gACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAAt         >  2:3857396/1‑100 (MQ=255)
                                                                                            gACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAAt         >  2:3149043/1‑100 (MQ=255)
                                                                                              ccAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGa       >  1:3158140/1‑100 (MQ=255)
                                                                                               cAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGAt      <  2:2648425/100‑1 (MQ=255)
                                                                                                 gcGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCa    <  2:273514‑M2/98‑1 (MQ=255)
                                                                                                  cGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCAt   >  2:1179623‑M2/2‑100 (MQ=255)
                                                                                                   |                                                                                                   
GGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACCCATTGATGGTGTTCACAATGCCCGCCGAACGCATTCGTGTTGACCAGCGGGCATCCTTTCTCACTCCCCGACCAGAATCACTTCAACCCCAGCCTTTCGCAGTCCTTCCAGGCTATCCGCAGGAATGCCTTCATCAACAATGATCATG  >  NC_000913/3277745‑3277943

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.