New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 699505NA (NA)9 (0.060) 5/162 NT NA noncoding (81/98 nt) RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP61 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 4441401 = NA (NA)noncoding (9/98 nt) RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP335 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 150 total aligned reads displayed.

CAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGG  >  NC_000913/699406‑699604
                                                                                                   |                                                                                                   
cAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATA                                                                                                     <  2:1620856‑M1/100‑1 (MQ=255)
  aaGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAg                                                                                                   <  1:2454068/100‑1 (MQ=255)
    gTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCg                                                                                                 >  1:3257700/1‑100 (MQ=255)
     tGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCGGCGTAGGCCTGATAAGCGt                                                                                                >  1:1296985/1‑100 (MQ=255)
      gCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGt                                                                                                >  1:3103830/1‑99 (MQ=255)
      gCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTa                                                                                               >  2:2014810/1‑100 (MQ=255)
        gATTTGGTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAg                                                                                              <  1:3579809/99‑1 (MQ=255)
         aTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcg                                                                                            <  1:4012585/100‑1 (MQ=255)
         aTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcg                                                                                            <  1:4012813/100‑1 (MQ=255)
         aTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcg                                                                                            <  2:2741716/100‑1 (MQ=255)
         aTTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAgcg                                                                                            <  2:4376468/100‑1 (MQ=255)
             gTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATc                                                                                        >  1:628138/1‑100 (MQ=255)
               tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAg                                                                                      <  2:3262066/100‑1 (MQ=255)
               tCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAg                                                                                      >  1:4032950/1‑100 (MQ=255)
               gtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAg                                                                                      >  1:564044/5‑100 (MQ=17)
                cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATGcgctacgcttatcagg                                                                                     <  2:1507213‑M1/100‑17 (MQ=255)
                cATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAgg                                                                                     >  2:992753/1‑100 (MQ=255)
                 aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATGcgctacgcttatcaggc                                                                                    <  2:3924150‑M1/100‑18 (MQ=255)
                 aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                    <  1:602203/100‑1 (MQ=255)
                 aTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGc                                                                                    <  2:843825/100‑1 (MQ=255)
                  tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATGcgctacgcttatcaggcc                                                                                   <  2:2085865‑M1/100‑19 (MQ=255)
                  tGCCGGATGCGGCGTGAACGCATTATCCGGACTACAAAAGCATGAAAAATCAATATATTGCAGAAGCTGCGTAGGTCTGATAAGCGAAgcgc                                                                                           >  1:3428752/1‑92 (MQ=17)
                   gCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAg                                                                                  >  2:428299/1‑100 (MQ=255)
                    ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGt                                                                                 <  1:1822419/100‑1 (MQ=255)
                      ggataaggcgTTCACGCCGCATCCGGCCTACAAAAGCATGAAAATTCAATACATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGttt                                                                               >  2:3843316/7‑100 (MQ=17)
                      ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATGcgctacgcttatcaggcctacg                                                                               <  2:2580806‑M1/100‑23 (MQ=255)
                       gATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATGcgctacgcttatcaggcctacgc                                                                              <  1:2823333‑M1/100‑24 (MQ=255)
                        aTGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTgg                                                                             <  2:3490909/100‑1 (MQ=255)
                         tGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGc                                                                            <  1:885226/100‑1 (MQ=255)
                           cggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCCGTTTggag                                                                           >  2:3671303/1‑97 (MQ=255)
                            ggcgTGAACGCCTTATCCGGCCTACAAAAGCATGCAAATTCAATATATTGCACGAGCTGAATACGACTGATAATCGTAGCGCATTGGGCAGTTTgggg                                                                           >  1:834503/1‑96 (MQ=14)
                            ggcgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGtt                                                                         >  2:2336587/1‑100 (MQ=255)
                              cgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTg                                                                       <  1:3573396/100‑1 (MQ=255)
                              cgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTg                                                                       >  2:1858990/1‑100 (MQ=255)
                              cgTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTg                                                                       <  1:2323579/100‑1 (MQ=255)
                                 gAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtca                                                                    >  2:434959/1‑100 (MQ=255)
                                    cGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtcatca                                                                 <  1:3147996/100‑1 (MQ=255)
                                     gCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGtcatca                                                                 <  1:379432/99‑1 (MQ=255)
                                     gCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCag                                                                >  1:4084955/1‑100 (MQ=255)
                                       cTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCagag                                                              >  2:2366483/1‑100 (MQ=255)
                                       cTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCagag                                                              <  1:434957/100‑1 (MQ=255)
                                       cTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCagag                                                              <  2:2739001/100‑1 (MQ=255)
                                       cTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCATAGCGCATCAGGCAGTTTGGCGTTTGTCATCagag                                                              >  2:1211266/1‑100 (MQ=255)
                                         tATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGcc                                                            >  2:477508/1‑100 (MQ=255)
                                         tATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGAAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGcc                                                            >  2:1589431/1‑100 (MQ=255)
                                            ccGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGTGcc                                                            <  1:2840756/97‑1 (MQ=255)
                                            ccGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAAc                                                         >  2:1561435/1‑100 (MQ=255)
                                            ccGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAAc                                                         >  1:1254120/1‑100 (MQ=255)
                                                ccTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACg                                                     >  2:1294576/1‑100 (MQ=255)
                                                  tACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTc                                                   <  2:1027345/100‑1 (MQ=255)
                                                   aCAAAAGCATGAAAATTCAATCTATTGCAGGAGCTGTATAGGCCTAATAAGCGTAGCGCATCAGGCAGTTTGGAGTTTGTCATCAGAGCCAACCACGTcc                                                  >  1:1076508/1‑100 (MQ=25)
                                                   aCAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTcc                                                  >  2:2344520/1‑100 (MQ=255)
                                                    cAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCg                                                 >  1:2797185/1‑100 (MQ=255)
                                                    cAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCg                                                 <  2:2848933/100‑1 (MQ=255)
                                                    cAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCg                                                 >  2:619663/1‑100 (MQ=255)
                                                     aaaaGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGc                                                <  2:2515660/100‑1 (MQ=255)
                                                      aaaGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCa                                               >  2:3354358/1‑100 (MQ=255)
                                                       aaGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAg                                              <  1:2091632/100‑1 (MQ=255)
                                                          cATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACg                                           <  1:2610917/100‑1 (MQ=255)
                                                           aTGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCCCGTCCGCAGACGt                                          >  1:3475651/1‑100 (MQ=255)
                                                            tGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTg                                         >  1:3116263/1‑100 (MQ=255)
                                                            tGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAACGTAGCGCATCAGGCAGTTGGGCGTTTGTCAGCAGAGCCAACCACGTCCGCAGACGTg                                         >  1:2395545/1‑100 (MQ=255)
                                                            tGAAAAATCGAAATATTGCAGGCGCTATGTAGGTCTGATTAGTGTATCGGATCAGGCAGTTGGGTGTTTGTCATCAGGGCCAACCACGTCCGCa                                               <  1:140228/94‑1 (MQ=255)
                                                               aaaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGtt                                      <  2:2172415/100‑1 (MQ=255)
                                                               aaaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGtt                                      >  1:2955136/1‑100 (MQ=255)
                                                                aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTg                                     <  2:697612/100‑1 (MQ=255)
                                                                aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTg                                     <  1:477506/100‑1 (MQ=255)
                                                                aaTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTg                                     >  2:3436686/1‑100 (MQ=255)
                                                                 aTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCTGCGGACGTGGTTgg                                    <  1:1437940/100‑2 (MQ=255)
                                                                 aTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGc                                    >  1:3176913/1‑100 (MQ=255)
                                                                 aTTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGc                                    <  2:2198525/100‑1 (MQ=255)
                                                                    cAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTAt                                 >  2:819189/1‑100 (MQ=255)
                                                                     aaTATATTGCAGGAACTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTAtt                                >  1:3951497/1‑100 (MQ=255)
                                                                      atatatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTc                               >  1:1093042/1‑100 (MQ=255)
                                                                      atatatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTc                               <  1:2320769/100‑1 (MQ=255)
                                                                       tatatTGCATGAGCTGCGTAGGCCTTATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGTCAACCACGTCCGTTGACATGGTTGCTATTCa                              <  1:2123594/100‑1 (MQ=21)
                                                                       tatatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCa                              >  2:552501/1‑100 (MQ=255)
                                                                       tatatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCa                              <  1:2529886/100‑1 (MQ=255)
                                                                        atatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAg                             <  2:1202520/100‑1 (MQ=255)
                                                                         tatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCATCCACGTCCGCAGACGTGGTTGCTATTCAGa                            <  2:1348546/100‑1 (MQ=255)
                                                                         tatTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGCGGTTGCTATTCAGa                            <  2:2419463/100‑1 (MQ=255)
                                                                          atTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCACAGACGTGGTTGCTATTCAGAt                           >  2:1890155/1‑100 (MQ=255)
                                                                            tGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATaa                         >  1:2188242/1‑100 (MQ=255)
                                                                             gCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAAc                        >  2:3502732/1‑100 (MQ=255)
                                                                                 gAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCg                    <  2:2855048/100‑1 (MQ=255)
                                                                                  aGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGa                   >  1:2235399/1‑100 (MQ=255)
                                                                                    cTGCGTAGGCATGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGAtt                 <  1:2883651/100‑1 (MQ=255)
                                                                                      gCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTc               <  2:2466858/100‑1 (MQ=255)
                                                                                       cGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTc               >  2:384043/1‑99 (MQ=255)
                                                                                       cGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCa              <  1:4353104/100‑1 (MQ=255)
                                                                                         tAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGc            <  1:1477833/100‑1 (MQ=255)
                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCg           <  1:752428/100‑1 (MQ=255)
                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCg           <  1:2943338/100‑1 (MQ=255)
                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCg           <  2:712163/100‑1 (MQ=255)
                                                                                          aGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCg           <  2:978169/100‑1 (MQ=255)
                                                                                           ggCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGa          >  2:4040494/1‑100 (MQ=255)
                                                                                            gCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGAc         >  1:3156162/1‑100 (MQ=255)
                                                                                                   acgctatgccgatcaggcctacgcagtccttgcaatatattgaatttggacgattttgtaggcctggtaagtcgtttacgccgcatcaggcatagacaaa  <  1:1837160‑M1/100‑100 (MQ=255)
                                                                                                   acgctatgccgatcaggcctacgcagtccttgcaatatattgaatttggacgattttgtaggcctggtaagtcgtttacgccgcatcaggcatagacaaa  >  2:2614975‑M1/1‑1 (MQ=255)
                                                                                                   aaGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACggg  <  1:1891678/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
CAAAGTGCGATTTGTTCATGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGCATGAAAATTCAATATATTGCAGGAGCTGCGTAGGCCTGATAAGCGTAGCGCATCAGGCAGTTTGGCGTTTGTCATCAGAGCCAACCACGTCCGCAGACGTGGTTGCTATTCAGATAACGTCGATTTCAGCGACTGACGGG  >  NC_000913/699406‑699604

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.