New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4421	125 (0.840)	25 (0.180)	14/168	NT	16.8%	coding (688/1287 nt)	thrC	L‑threonine synthase
	?	NC_000913	= 4450	130 (0.920)					coding (717/1287 nt)	thrC	L‑threonine synthase

GGCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4318‑4421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  <  NC_000913/4450‑4352                                                                                                                                                                                                             GGCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAA                                                                                                         >  1:2808018/1‑100  GCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGTGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAG                                                                                                        <  2:2083310/100‑1  GCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAG                                                                                                        <  1:1366972/100‑1  GCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAG                                                                                                        <  2:1030326/100‑1  GCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAG                                                                                                        <  1:1687152/100‑1   CGTTTGATGATGAAGAACTGAAAGTTGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGC                                                                                                       <  2:683257/100‑1   CGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGC                                                                                                       <  1:2941454/100‑1         ATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTG                                                                                                 <  2:3007320/100‑1                                CTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGC                                                                          <  2:1859080/100‑1                                  AGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAAC                                                                       <  2:348401/100‑1                                   GGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACA                                                                      <  2:307009/100‑1                                    GGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACAG                                                                     <  2:1195636/100‑1                                    GGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACAG                                                                     <  1:458727/100‑1                                    GGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACAG                                                                     <  1:496177/100‑1                                     GTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAG                                                                     <  1:3561332/100‑1                                     GTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGC                                                                    <  1:3504557/100‑1                                     GTTAAACTCGGCTAACGCGATTAACATCAGCCGGTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAG                                                                     <  2:2778190/100‑1                                      TTAAACTCGGCTAACTCGATTCACATAAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGC                                                                    <  1:780189/100‑1                                       TAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCT                                                                   <  1:1595698/100‑1                                       TAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCT                                                                   <  2:1288495/100‑1                                       TAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCT                                                                   <  1:89617/100‑1                                       TAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTT                                                                  <  1:1441584/100‑1                                       TAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTT                                                                  <  1:3254762/100‑1                                       TAAACTCAGCTAACTCGATTAACATCAGCCGTGTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCT                                                                   <  2:2161907/100‑1                                        AAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCT‑GTTGCGCGTCTCCTGCGGCAACTGCGCAACAGCTTC                                                                 <  1:3404222/100‑1                                        AAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGC‑GGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTC                                                                 <  1:2927257/100‑1                                         AACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTC                                                                 <  2:1708007/100‑1                                          ACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCA                                                                <  2:1195357/100‑1                                           CTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAA                                                               <  1:470494/100‑1                                             CGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAG                                                             <  1:906961/100‑1                                              GGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAA                                                              <  2:2403992/98‑1                                                     TCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCA                                                     <  1:2025667/100‑1                                                                            GGCGCAGATTTGCTACTACTTTGAAGCTGCTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGAAGTAGCAAATCTGCGCCAGCAAACGGCTGA                              <  1:2112700/100‑1                                                                                                    AGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTA      >  1:607443/1‑100                                                                                                    AGCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTT       >  2:278958/1‑99                                                                                                     GCTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAA     >  1:1709546/1‑100                                                                                                      CTGGTTGCGCGTTTCCTGCGGCAGCTTCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAAC    <  2:1054084/100‑1                                                                                                      CTGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAAC    <  1:2062611/100‑1                                                                                                       TGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAACTCTGCGCCAGCAAACGGCTGATGTTAATCTAGTTAGCCGAGTTTAACC   <  2:1315264/100‑1                                                                                                       TGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACC   <  1:3351019/100‑1                                                                                                       TGGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACC   <  1:1551117/100‑1                                                                                                        GGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  <  2:1691219/100‑1                                                                                                        GGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  >  1:3149063/1‑100                                                                                                        GGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  <  1:597611/100‑1                                                                                                        GGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  >  2:4072397/1‑100                                                                                                        GGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  >  1:148665/1‑100                                                                                                                                                                                                             GGCGTTTGATGATGAAGAACTGAAAGTGGCGCTAGGGTTAAACTCGGCTAACTCGATTAACATCAGCCGTTTGCTGGCGCAGATTTGCTACTACTTTGAAGCTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4318‑4421 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgGTTGCGCGTCTCCTGCGGCAGCTGCGCAACAGCTTCAAAGTAGTAGCAAATCTGCGCCAGCAAACGGCTGATGTTAATCGAGTTAGCCGAGTTTAACCC  <  NC_000913/4450‑4352

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.