New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 884917	117 (0.790)	22 (0.160)	12/160	NT	16.7%	intergenic (+12/+29)	mdfA/ybjH	multidrug efflux system protein/uncharacterized protein
	?	NC_000913	= 884930	114 (0.850)					intergenic (+25/+16)	mdfA/ybjH	multidrug efflux system protein/uncharacterized protein

TTTAATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/884810‑884917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcctgaTCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCGT  <  NC_000913/884930‑884832                                                                                                                                                                                                                 TTTAATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAA                                                                                                             <  1:3774242/100‑1    tcTCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATG                                                                                                          <  2:4109626/98‑1    AATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATG                                                                                                          <  1:1017937/100‑1    AATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATG                                                                                                          >  1:1618668/1‑100     ATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGC                                                                                                         <  1:2404940/100‑1      cgatcTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATCAACAGATGGGAAATTCTCACGAAGCGTAAAAAAATGCC                                                                                                        <  2:2586898/95‑1      TCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCC                                                                                                        >  1:799935/1‑100       CTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGaga                                                                                                       >  1:4109655/1‑97       CTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCT                                                                                                       <  1:1996006/100‑1        TCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTG                                                                                                      <  1:1210724/100‑1        TCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTG                                                                                                      <  1:1211917/100‑1            CAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCAGATCG                                                                                                  >  1:2586905/1‑100                 TTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAA                                                                                             >  2:3964110/1‑100                         GGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCA                                                                                     <  2:485015/100‑1                              TTTGTGGCTGTAGTTGATGGTTATCTTTTTAAAATATAAACAGATGGAAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGTACAAAGCAGTCAGGCAT                                                                                <  2:29169/100‑1                               TTGTGTTTGTCGCTGATGGTTATCTTTTTAAAAGAAAAACAGATGGGAAATTCTCACGAAGGTCAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                               <  1:2951437/100‑1                               TTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                               <  2:3167425/100‑1                               TTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                               <  1:2134148/100‑1                               TTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                               <  2:1520168/100‑1                               TTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCAAGAAAAATAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATT                                                                               <  2:1167825/100‑1                                TGTGGCTGTCGCTGATGGTTATGTTTTTAAAAAATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTT                                                                              <  2:2759945/100‑1                                TGTGGCTGTCGCTGATGGTTATCTTTGTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTT                                                                              <  2:3671800/100‑1                                 GTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTT                                                                             <  2:4094166/100‑1                                  TGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTT                                                                            <  1:99616/100‑1                                  TGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTT                                                                            <  1:1905938/100‑1                                   GGCTGTCGCTGATGGTTATCTTTTTAGAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTT                                                                           <  2:3452564/100‑1                                   GGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTT                                                                           <  1:3964137/100‑1                                   GGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTT                                                                           <  1:251831/100‑1                                   GGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTT                                                                           <  2:2391381/100‑1                                      TGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTAC                                                                        <  1:1093675/100‑1                                      TGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTAC                                                                        <  1:1480056/100‑1                                       GTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACC                                                                       <  1:971980/100‑1                                          GCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCC                                                                      <  2:1952722/98‑1                                           CTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTC                                                                   <  2:1710887/100‑1                                                                                                     ATGCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAA         <  2:1925671/100‑1                                                                                                       GCCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAAT       >  2:4120364/1‑100                                                                                                        CCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATT      >  2:3089676/1‑100                                                                                                        CCTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATT      >  1:117564/1‑100                                                                                                         CTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTC     >  2:2423447/1‑100                                                                                                         CTGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTC     <  1:3826142/100‑1                                                                                                          TGATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCC    <  2:3830310/100‑1                                                                                                           GATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACACAATTCCG   <  1:2194345/100‑1                                                                                                           GATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCG   <  1:3352747/100‑1                                                                                                            ATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCGT  <  2:1714141/100‑1                                                                                                            ATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCGT  >  1:608466/1‑100                                                                                                            ATCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCGT  <  1:2488229/100‑1                                                                                                                                                                                                                 TTTAATCTCTTCAACCTTGTCAACGGAATTTTGTGGCTGTCGCTGATGGTTATCTTTTTAAAAGATAAACAGATGGGAAATTCTCACGAAGGGTAAAAAAATGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/884810‑884917 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aatgcctgaTCGCACAAAGCAGTCAGGCATTTTTTTACCCTTCGTGAGAATTTCCCATCTGTTTATCTTTTAAAAAGATAACCATCAGCGACAGCCACAAAATTCCGT  <  NC_000913/884930‑884832

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.