| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 228721 = | NA (NA) | 70 (0.500) | 14/166 | NT | NA | intergenic (+59/‑35) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon |
| ? | NC_000913 | 228745 = | NA (NA) | intergenic (+83/‑11) | rrlH/rrfH | 23S ribosomal RNA of rrnH operon/5S ribosomal RNA of rrnH operon | |||||
CCGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACC > NC_000913/228646‑228786 | ccGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa > 1:2913784/1‑100 (MQ=33)ccGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa > 2:2729313/1‑100 (MQ=33)ccGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa < 1:340686/100‑1 (MQ=33)ccGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa < 2:1003142/100‑1 (MQ=33)ccGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATa > 1:1780666/1‑100 (MQ=33) cGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaa > 2:2134923/1‑100 (MQ=33) gTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaa > 2:1729982/1‑100 (MQ=33) tGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa < 1:1142143/100‑1 (MQ=32) tGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGAGGTCTGATaa > 2:1104002/1‑98 (MQ=17) tGAGGCGTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATaaaa < 1:3818586/100‑1 (MQ=17) gAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAAc < 1:456634/100‑1 (MQ=33) ggCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAg > 2:2614573/1‑100 (MQ=33) gCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTTATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa < 2:132438/100‑1 (MQ=17) gCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa > 2:2422445/1‑100 (MQ=33) gCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGa > 1:2266770/1‑100 (MQ=33) tAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAtt > 2:2741004/1‑100 (MQ=33) aCCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTg < 1:212196/100‑1 (MQ=33) aCCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTg > 1:3373243/1‑100 (MQ=33) ccTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGc > 2:2483091/1‑100 (MQ=33) ccTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGc > 1:2977207/1‑100 (MQ=33) cTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGcc < 1:4180889/100‑1 (MQ=33) tACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTg < 1:2715049/100‑1 (MQ=33) tACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTg < 1:2492514/100‑1 (MQ=32) tACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTg < 1:1949386/100‑1 (MQ=33) aCAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTgg > 2:2730252/1‑100 (MQ=33) aCAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTgg < 1:3525666/100‑1 (MQ=32) cAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGCTAAAACAGACTTTGCCTgg > 1:1392313/1‑99 (MQ=16) cAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc > 1:1130002/1‑100 (MQ=32) cAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc > 1:1654379/1‑100 (MQ=33) cAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggc > 2:2861834/1‑100 (MQ=33) cAACGACGAAGCTG‑TTTTGGCGGAATCAGACAAGACTTTCAACCTGATACAGATTAAATTAGAAACCAGACGCAGTCTGATAATACATAATTTGCCTg > 2:288602/1‑98 (MQ=2) aCGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg > 1:3234307/1‑100 (MQ=33) tggcGAGGCTGTTTTTGGCGGATTGAGAGGAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcgg > 2:610067/4‑100 (MQ=1) cGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcggc < 1:1414014/100‑1 (MQ=32) cGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTggcggc < 2:1573408/100‑1 (MQ=33) gCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGcc < 1:2186881/100‑1 (MQ=35) gCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGcc < 1:50281/100‑1 (MQ=33) ccGAAGCTG‑TTTTGGCGGATTGAGCGAAGAGTGTCAGCCTGATACAGATTAAATGAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg < 1:748370/100‑1 (MQ=11) ccGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg > 1:1857470/1‑100 (MQ=35) ccGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg > 2:2261459/1‑100 (MQ=35) ccGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAACCGGTCTGATAAAACAGAATTTGCCTGGCGGCCg < 2:2774563/100‑1 (MQ=25) cGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGt < 2:3140968/100‑1 (MQ=35) gAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTa < 1:403918/100‑1 (MQ=35) aaGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAg < 1:2730259/100‑1 (MQ=35) aGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgc < 1:81652/100‑1 (MQ=35) gCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgcg < 2:129328/100‑1 (MQ=35) gCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgcg > 1:2291288/1‑100 (MQ=35) cTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAgcgc > 2:123377/1‑100 (MQ=35) g‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATCAAACAGAATTTGCCTGGCGGCCGTAGCGCgg > 2:2041884/1‑100 (MQ=18) g‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg < 2:1990000/100‑1 (MQ=33) g‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg > 2:2349802/1‑100 (MQ=33) g‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg > 2:1839462/1‑100 (MQ=33) g‑TTTTGGCGGATTGAGAGAAGAGTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCgg < 2:1991147/100‑1 (MQ=17) nttGGCGGATTGAGAGAAGATTTTCAGCCTGATACTGATTAACTCAGAAGGCAGAAGCGGTCTGATCAAACAGAATTTGCCTGGCGGCCGTAGCGCgg > 2:4122553/2‑98 (MQ=11) ttGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtgg > 2:947823/1‑100 (MQ=32) tGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCggtggt > 2:572414/1‑100 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGACTTTGCCTGGCGGCCGTAGCGCGGTGGTc < 2:3071188/100‑1 (MQ=18) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 2:663123/1‑100 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 1:32736/1‑100 (MQ=32) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 2:3706259/1‑100 (MQ=32) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc < 1:1566450/100‑1 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 1:240339/1‑100 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 1:2811867/1‑100 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc < 1:3401135/100‑1 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc < 1:3406110/100‑1 (MQ=33) ggCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTc > 1:50761/1‑100 (MQ=33) gCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTcc > 2:1462379/1‑100 (MQ=33) cGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTccc < 1:2003385/100‑1 (MQ=33) ggATGGGGAGAAGATTGTAGGCCTGATACAGATTAGAGCAGAACGCAGAAGCGGTCTGATAGACCAGGATTTGCCTAGTGGTCGTAGCGCggtgagcgc < 2:2049132/99‑6 (MQ=2) gATTGAGAGAAGATTTTCAGCCTGATACCGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAACTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc < 1:1237866/100‑1 (MQ=12) gATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAc < 1:3884618/100‑1 (MQ=32) aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 2:2881722/100‑1 (MQ=31) aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 1:1331467/100‑1 (MQ=31) aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 2:2412537/100‑1 (MQ=31) aTTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 2:1928425/100‑1 (MQ=31) ttGGGAGAAGAGTTTCGGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCAcc < 2:993895/99‑1 (MQ=2) | CCGTGAGGCTTAACCTTACAACGCCGAAGCTG‑TTTTGGCGGATTGAGAGAAGATTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCCGTAGCGCGGTGGTCCCACC > NC_000913/228646‑228786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |