BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3635910 =	128 (0.860)	27 (0.210)	10/154	NT	20.5%	intergenic (+17/+298)	yhiM/yhiN	acid resistance protein, inner membrane/putative oxidoreductase
*	?	NC_000913	3635946 =	99 (0.770)	27 (0.210)	10/154	NT	20.5%	intergenic (+53/+262)	yhiM/yhiN	acid resistance protein, inner membrane/putative oxidoreductase

Only 100 of 210 total aligned reads displayed.

TGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGA  >  NC_000913/3635847‑3636045

tgttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGttttt                                                                                                     <  1:953290/100‑1 (MQ=255)

 gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTc                                                                                                    >  2:1172495/1‑100 (MQ=255)

 gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTc                                                                                                    <  2:4076175/100‑1 (MQ=255)

 gttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTc                                                                                                    <  2:479937/100‑1 (MQ=255)

  ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                                                   <  2:733695/100‑1 (MQ=255)

  ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                                                   <  2:328905/100‑1 (MQ=255)

  ttCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCt                                                                                                   <  2:1493817/100‑1 (MQ=255)

   tgctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                                                  >  1:3321834‑M1/61‑100 (MQ=255)

   tctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCtt                                                                                                  >  2:2081879/1‑100 (MQ=255)

    ctcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTa                                                                                                 <  2:591467/100‑1 (MQ=255)

     tcAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTCGTTTTTCTTa                                                                                                 >  2:2038207/1‑99 (MQ=255)

     ctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAg                                                                                                >  1:915942‑M1/59‑100 (MQ=255)

     ctgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAg                                                                                                >  1:3902836‑M1/59‑100 (MQ=255)

      tgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCTGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAgg                                                                                               >  1:2963914‑M1/58‑100 (MQ=255)

      tgttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAgg                                                                                               >  1:3319111‑M1/58‑100 (MQ=255)

      cAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAgg                                                                                               <  1:2001476/100‑1 (MQ=255)

      cAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAgg                                                                                               >  1:3069784/1‑100 (MQ=255)

       gttttttatacttaaccactatgcattaatgctgcgttatttcatgatgcctaagaAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGc                                                                                              >  1:1702083‑M1/57‑100 (MQ=255)

       aaTCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGc                                                                                              >  1:3294298/1‑100 (MQ=255)

       aaTCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGc                                                                                              <  1:2270783/100‑1 (MQ=255)

            tttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatcat                                                                                         <  2:392886/100‑1 (MQ=255)

            tttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatc                                                                                           >  2:1731804/1‑98 (MQ=255)

             ttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGcatca                                                                                          <  1:1470337/98‑1 (MQ=255)

             ttCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATg                                                                                        <  1:3797922/100‑1 (MQ=255)

               cAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGaa                                                                                      >  1:870883/1‑100 (MQ=255)

                 atatTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAAt                                                                                    >  1:2778635/1‑100 (MQ=255)

                       gAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                                              >  1:832537/1‑100 (MQ=255)

                       gAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                                              >  1:3412070/1‑100 (MQ=255)

                       gAAGCGGGTTCTGCTAAAAAATAATTGCAACGCACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgca                                                                              >  2:1630179/1‑100 (MQ=255)

                        aaGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACg                                                                                <  2:1845158/97‑1 (MQ=255)

                          gCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACgcagca                                                                           <  1:2713019/100‑1 (MQ=255)

                            gggTTCTGGTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTACGTAAGGCTGGTTTTTACTAGACATCATGAAATAACGCAGCAt                                                                          >  2:3871955/1‑99 (MQ=255)

                            gggTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGGTGGTATTACTTAGGCATCATGAAATAACGCAGCAtt                                                                         >  2:3554784/1‑100 (MQ=255)

                              gTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTaa                                                                       >  1:2905415/1‑100 (MQ=255)

                                tCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATg                                                                     <  2:1011886/100‑1 (MQ=255)

                                tCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATg                                                                     <  1:3852667/100‑1 (MQ=255)

                                tCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATg                                                                     <  2:3996004/100‑1 (MQ=255)

                                   gCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCAt                                                                  >  1:139976/1‑100 (MQ=255)

                                      aaaaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTGCTTATGCATCATGAAATAACGCAGCATTAATGCATAGt                                                               >  2:2283528/1‑100 (MQ=255)

                                        aaaaTAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTgg                                                             <  1:2970256/100‑1 (MQ=255)

                                           ataatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTa                                                          <  2:1052284/100‑1 (MQ=255)

                                           ataatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTa                                                          <  2:2460495/100‑1 (MQ=255)

                                             aatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAg                                                        <  1:1952058/100‑1 (MQ=255)

                                             aatTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAg                                                        <  2:3129858/100‑1 (MQ=255)

                                              atTGCAACGTACCGGATAAAACCAGCGTTGACCCTTTGCGTAACGCTGGCTTTTCTTAGCCATCATGAAATAACGCAGCATTAACGCATAGTGGTTa                                                          >  2:893405/1‑97 (MQ=255)

                                               ttGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGta                                                      >  1:588704/1‑100 (MQ=255)

                                                  cAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaa                                                   >  2:3097694/1‑100 (MQ=255)

                                                    aCGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaaaa                                                 <  1:1654967/100‑1 (MQ=255)

                                                     cGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaaaaa                                                >  2:3511823/1‑100 (MQ=255)

                                                      gTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaaaaaa                                               >  2:255587/1‑100 (MQ=255)

                                                      gTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATaaaaaa                                               >  1:2736692/1‑100 (MQ=255)

                                                        aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             >  1:1246998/1‑100 (MQ=255)

                                                        aCCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACa                                             >  1:1231792/1‑100 (MQ=255)

                                                         ccGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAg                                            >  2:1710807/1‑100 (MQ=255)

                                                          cGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGc                                           <  1:4118322/100‑1 (MQ=255)

                                                          cGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGc                                           <  1:1164270/100‑1 (MQ=255)

                                                           ggATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCa                                          <  1:287153/100‑1 (MQ=255)

                                                            agaaaaaccagcgttacgcaaatggtcaacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCaa                                         >  2:2088977‑M2/40‑100 (MQ=255)

                                                             aTAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCaaa                                        >  1:3563596/1‑100 (MQ=255)

                                                              tAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAg                                       <  1:2031221/100‑1 (MQ=255)

                                                              aaaaaccagcgttacgcaaatggtcaacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAg                                       >  1:3344685‑M2/38‑100 (MQ=255)

                                                               aaaaccagcgttacgcaaatggtcaacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGt                                      >  2:14111‑M2/37‑100 (MQ=255)

                                                               AAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGt                                      >  1:3099578‑M1/1‑100 (MQ=255)

                                                                aaaCCAGCGTTATCCATATACGTAACGGTGGTTTTTCTTAGGCATTATGAAATAACGCGGCAGGTATGCATATTGTTGAAGTATAGAAAACATCAAAg                                       >  2:772942/1‑98 (MQ=255)

                                                                AAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGtt                                     <  1:722314‑M1/100‑1 (MQ=255)

                                                                AAACCAGCGTTGACCAATTGCATAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGtt                                     >  2:2020243‑M1/1‑100 (MQ=255)

                                                                 aaccagcgttacgcaaatggtcaacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGtt                                     >  1:3624355‑M2/35‑99 (MQ=255)

                                                                 aaccagcgttacgcaaatggtcaacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTa                                    >  1:3485590‑M2/35‑100 (MQ=255)

                                                                  accagcgttacgcaaatggtcaacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc                                   >  2:2804509‑M2/34‑100 (MQ=255)

                                                                  ACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc                                   >  1:2143626‑M1/1‑100 (MQ=255)

                                                                  ACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc                                   <  2:1545819‑M1/100‑1 (MQ=255)

                                                                  ACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTAc                                   >  1:3906166‑M1/1‑100 (MQ=255)

                                                                   CCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACt                                  <  2:4184898‑M1/100‑1 (MQ=255)

                                                                   CCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACt                                  <  1:1090462‑M1/100‑1 (MQ=255)

                                                                    CAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTg                                 >  1:1310143‑M1/1‑100 (MQ=255)

                                                                         TTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGttttt                            <  1:3335147‑M1/100‑1 (MQ=255)

                                                                          TGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           >  1:1024974‑M1/1‑100 (MQ=255)

                                                                          TGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           >  2:1306076‑M1/1‑100 (MQ=255)

                                                                          TGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGtttttt                           <  1:4002078‑M1/100‑1 (MQ=255)

                                                                           gACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGttttttt                          <  1:533063/100‑1 (MQ=255)

                                                                               aTTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAc                      >  1:1126538/1‑100 (MQ=255)

                                                                               aTTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAc                      <  1:3760780/100‑1 (MQ=255)

                                                                                tttGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAcc                     <  2:3054682/100‑1 (MQ=255)

                                                                                tttGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAAcc                     <  1:742605/100‑1 (MQ=255)

                                                                                  tctgTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTg                   <  1:1872821/97‑1 (MQ=255)

                                                                                  tGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTg                   >  1:3189632/1‑100 (MQ=255)

                                                                                   gCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGt                  <  1:3721462/100‑1 (MQ=255)

                                                                                    cGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGtt                 <  2:2181520/100‑1 (MQ=255)

                                                                                    cGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGtt                 <  1:1721426/100‑1 (MQ=255)

                                                                                    cGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGtt                 <  2:2710898/100‑1 (MQ=255)

                                                                                     gTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTgaga                >  2:1872818/1‑97 (MQ=255)

                                                                                      tAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCa               <  1:2015597/100‑1 (MQ=255)

                                                                                       aacgctggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCat              >  1:3194900‑M2/13‑100 (MQ=255)

                                                                                            tggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTc         <  2:3439311‑M2/93‑1 (MQ=255)

                                                                                            tggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTc         <  2:3310832‑M2/93‑1 (MQ=255)

                                                                                            tggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTc         <  2:1543357‑M2/93‑1 (MQ=255)

                                                                                             ggttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACCGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCa        >  1:1070976‑M2/7‑100 (MQ=255)

                                                                                              gttttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCCTATTTCAt       >  1:3497819‑M2/6‑100 (MQ=255)

                                                                                                 ttTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATaaa    <  1:1805770‑M2/98‑1 (MQ=255)

                                                                                                   tCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGa  <  2:1246997/100‑1 (MQ=255)

TGTTCTCAATCGTTTCAATATTAGAAGCGGGTTCTGCTAAAAAATAATTGCAACGTACCGGATAAAACCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTCAACCTGTTCATATTTCATAAAGA  >  NC_000913/3635847‑3636045

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.