New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2662541	NA (NA)	11 (0.100)	8/164	NT	NA	noncoding (233/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences
	?	NC_000913	= 2662574	NA (NA)					noncoding (266/266 nt)	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences	REP184 (repetitive extragenic palindromic) element; contains 6 REP sequences

CACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2662443‑2662541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCG  <  NC_000913/2662574‑2662469                                                                                                                                                                                                               CACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGCACGCCTTATCCGACCTACGGATCTGTTCACTGTAGG                                                                                                           >  2:3266103/1‑100  ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGC                                                                                                          <  1:2999790/100‑1  ACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGC                                                                                                          <  1:2128350/100‑1   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGCCCTACGGTTCTGTTCACTGTAGGCC                                                                                                         >  2:627161/1‑100   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCC                                                                                                         <  1:907750/100‑1   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCC                                                                                                         <  2:2517115/100‑1   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCC                                                                                                         <  2:1942990/100‑1   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCC                                                                                                         <  1:2100103/100‑1   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCC                                                                                                         >  1:1185087/1‑100   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTCTGTTCACTGTAGGCC                                                                                                         <  1:3102503/100‑1   CTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGC                                                                                                          <  2:3010148/99‑1    TGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCT                                                                                                        >  1:3201962/1‑100    TGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCT                                                                                                        <  1:2337137/100‑1     GTAGGCCTGATAAGACGCATTACGCGTCGTATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTCATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       <  2:1970076/100‑1     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       <  1:2056973/100‑1     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       >  1:467489/1‑100     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       <  2:547576/100‑1     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       >  1:2797033/1‑100     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       >  2:2623118/1‑100     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       <  2:2694723/100‑1     GTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTG                                                                                                       >  1:175393/1‑100      TAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGA                                                                                                      >  1:2108059/1‑100      TAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGA                                                                                                      <  2:27217/100‑1       AGGCCTGATAATACGCATTACGCGTCGCACCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAT                                                                                                     <  2:1160459/100‑1       AGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAGCGCCTTATCCGACCTACGGTTCTGGTCACTGTAGGCCTGAT                                                                                                     >  2:2599977/1‑100       AGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAT                                                                                                     >  1:3192079/1‑100       AGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAT                                                                                                     <  1:2650078/100‑1        GGCCTGATAAGCCGCATTACCCGTCCCATCAGGCAACGGCTGTCGGTCGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAT                                                                                                     <  2:22564/99‑1        GGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCAGATGCGGCGTGTACCCCTTATCCGACCTACGGTTCTGTTCACTGTCGGCCTca                                                                                                      >  2:2272630/1‑96          CCTGATAAGCCGCCTCTCGCGTCGCTTCAGGCAACGGCTGTCGTATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGAT                                                                                                     <  2:527221/97‑1          CCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGGGGCGGGAACGCCTTATCAGACCTACGGTTATGTTGAAGGTAGGCCTGAT                                                                                                     >  2:947287/1‑97            TGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACCCCTTATCCGACCTACGGTACTGTGCACTGTAGGCCTGATGata                                                                                                 >  1:980750/1‑96                  GACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGACGCGGCGTGAACGCCTTATCCGACCTGCGGGTCTGTTCACTGTAGGCCTGATGatcc                                                                                                >  2:1991745/1‑90                    CGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATG                                                                                        <  1:570762/100‑1                           CGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTA                                                                                 <  1:2623130/100‑1                             CGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTTAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCAGATGCGACGCGTACTGCCTCTTATC                                                                               <  2:1715167/100‑1                              GTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCA                                                                              <  1:1737619/100‑1                              GTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATAAGACGCGTAATGCGTCTTATCA                                                                              <  2:2798528/100‑1                               TCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCAACGCGTAATGCGTCTTATCAG                                                                             <  2:1613435/100‑1                                 GCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGC                                                                           <  2:286397/100‑1                                 GCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGCCCTGATGCGACGCGTAATGCGTCTTATCAGGC                                                                           <  1:3101686/100‑1                                  CATCAGGCAACGGCTGTCGGATGCGGCGTGACCGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGCC                                                                          <  1:2262151/100‑1                                  CATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGCC                                                                          <  2:163737/100‑1                                   ATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGGCCTGATGCGACGCGTAATGCGTCTTATCAGGCCT                                                                         <  2:2831128/100‑1                                                                                                    GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCTTGATGC        <  2:2099875/100‑1                                                                                                    GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGC        <  1:1598183/100‑1                                                                                                    GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGC        <  1:657612/100‑1                                                                                                    GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGC        <  1:2038032/100‑1                                                                                                    GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGC        >  1:1649393/1‑100                                                                                                     CCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCG       >  1:2467469/1‑100                                                                                                     CCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCG       <  2:144522/100‑1                                                                                                     CCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCG       >  2:1074632/1‑100                                                                                                     CCTGATGCCACGCGCAATGCGTCTTATCAGGCCTACAGTGAACAGACCCGCAGGTCGGATAAGGCGTTCACGCCCCATCCGCCAGCCGTT                 >  2:514804/1‑90                                                                                                      CTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGCTGCGA      >  1:3060309/1‑100                                                                                                      CTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGA      >  1:455906/1‑100                                                                                                      CTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGA      <  1:572755/100‑1                                                                                                       TGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGAC     <  2:2254550/100‑1                                                                                                       TGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGA      >  2:2482356/1‑99                                                                                                       TGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGGCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGC        >  2:3144039/1‑97                                                                                                        GATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACG    <  1:1450852/100‑1                                                                                                        GATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACG    <  1:2975967/100‑1                                                                                                        GATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACG    <  2:408009/100‑1                                                                                                        GATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACG    <  1:659186/100‑1                                                                                                         ATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGC   <  2:1662663/100‑1                                                                                                          TGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCG  >  1:1295307/1‑100                                                                                                          TGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCG  <  1:1197370/100‑1                                                                                                                                                                                                               CACTGTAGGCCTGATAAGACGCATTACGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTGAACGCCTTATCCGACCTACGGTTCTGTTCACTGTAGgcctgat‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2662443‑2662541 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATGCGACGCGTAATGCGTCTTATCAGGCCTACAGTGAACAGAACCGTAGGTCGGATAAGGCGTTCACGCCGCATCCGACAGCCGTTGCCTGATGCGACGCG  <  NC_000913/2662574‑2662469

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.