New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3539757 =NA (NA)5 (0.050) 4/160 NT NA noncoding (12/34 nt) REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences REP252 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 3539792 = NA (NA)intergenic (+86/‑371) yhgF/feoA putative transcriptional accessory protein/ferrous iron transporter, protein A

Only 100 of 177 total aligned reads displayed.

GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAAC  >  NC_000913/3539693‑3539887
                                                                                                   |                                                                                               
gCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTg                                                                                                 >  1:3187134/1‑100 (MQ=255)
 cAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGc                                                                                                >  2:2470285/1‑100 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                               >  1:1334127/1‑100 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                               <  2:600612/100‑1 (MQ=255)
  aaaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGcc                                                                                               <  1:1835498/100‑1 (MQ=255)
   ttatgagtttggctgtggaataaaaatgccggagatattctccggcacttttatgtcaggcAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCt                                                                                              >  1:2690148‑M1/62‑100 (MQ=255)
   aaaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCt                                                                                              >  1:1455419/1‑100 (MQ=255)
    aaaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATGTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTg                                                                                             >  2:1750264/1‑100 (MQ=255)
     aaaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGa                                                                                            >  2:2789306/1‑100 (MQ=255)
      aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACTAAATCGTAGGGCAGAGAAGGCGTTCACGCCGCAGCTGGCAACGAACGCCTTGCCTGAc                                                                                           >  2:270631/1‑100 (MQ=255)
      aaCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGAc                                                                                           <  2:2886881/100‑1 (MQ=255)
       aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACa                                                                                          <  1:2993275/100‑1 (MQ=255)
       aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACa                                                                                          >  1:438579/1‑100 (MQ=255)
       aCGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACa                                                                                          >  1:1181879/1‑100 (MQ=255)
         gTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATa                                                                                        >  1:2229564/1‑100 (MQ=255)
           tAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATa                                                                                        >  2:1583421/1‑98 (MQ=255)
            aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa                                                                                     >  1:1736213/1‑100 (MQ=255)
            aaaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATaaaa                                                                                     >  1:2021838/1‑100 (MQ=255)
             aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                                                    <  2:1447347/100‑1 (MQ=255)
             aaCGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAg                                                                                    <  2:1318275/100‑1 (MQ=255)
               cGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTg                                                                                  >  1:2776226/1‑100 (MQ=255)
                gCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGc                                                                                 >  1:2446439/1‑100 (MQ=255)
                 cccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGcc                                                                                >  1:2258060/1‑100 (MQ=255)
                  ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg                                                                               <  2:1831787/100‑1 (MQ=255)
                  ccGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCg                                                                               <  2:1832629/100‑1 (MQ=255)
                   cGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCgg                                                                              <  2:411417/100‑1 (MQ=255)
                    gTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGga                                                                             >  1:2157830/1‑100 (MQ=255)
                     tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag                                                                            <  1:2390662/100‑1 (MQ=255)
                     tACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGgag                                                                            >  2:271731/1‑100 (MQ=255)
                       cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                                                          <  2:3157762/100‑1 (MQ=255)
                       cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                                                          >  1:1381777/1‑100 (MQ=255)
                       cTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGaa                                                                          <  1:2047666/100‑1 (MQ=255)
                         ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata                                                                        <  2:2481832/100‑1 (MQ=255)
                         ggCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAata                                                                        <  2:711358/100‑1 (MQ=255)
                          nccTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAatat                                                                       >  1:1357236/2‑100 (MQ=255)
                            cTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACAGAAAAGTGCCGGAGAATAtc                                                                      >  1:2122019/1‑99 (MQ=255)
                             tACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAtctc                                                                    >  2:467506/1‑100 (MQ=255)
                              aCGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCGGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATAGCTcc                                                                   <  1:558946/100‑1 (MQ=255)
                                 gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc                                                                >  2:1616896/1‑100 (MQ=255)
                                 gTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc                                                                >  2:931349/1‑100 (MQ=255)
                                  ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCa                                                               >  1:2269861/1‑100 (MQ=255)
                                  ttCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCGGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGc                                                                <  1:270633/99‑1 (MQ=255)
                                     gAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCAttt                                                            >  1:1336479/1‑100 (MQ=255)
                                        tttGCACGAAATCGTAGGGCAGATAAGGCGGTCGCGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCTGGCATTTTTa                                                         >  2:2157538/1‑100 (MQ=255)
                                           gCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc                                                      <  1:771881/100‑1 (MQ=255)
                                           gCACGAAATCGTAGGGCAGAAAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTc                                                      >  2:2007570/1‑100 (MQ=255)
                                            cACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTcc                                                     <  2:2398542/100‑1 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac                                                   >  1:69635/1‑100 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac                                                   >  1:1094007/1‑100 (MQ=255)
                                              cGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCcac                                                   <  1:1545427/100‑1 (MQ=255)
                                                aaaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAg                                                 >  1:1296464/1‑100 (MQ=255)
                                                aaaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAg                                                 <  1:938047/100‑1 (MQ=255)
                                                aaaTCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAg                                                 <  2:2226197/100‑1 (MQ=255)
                                                     gTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCaaa                                            >  1:439679/1‑100 (MQ=255)
                                                      tAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAAc                                           <  1:1924453/100‑1 (MQ=255)
                                                       aGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAAAGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACt                                          <  1:816814/100‑1 (MQ=255)
                                                        gggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc                                         <  1:2648818/100‑1 (MQ=255)
                                                        gggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTc                                         <  1:2655500/100‑1 (MQ=255)
                                                         ggCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGCATATCTCCGGCATTTTTATTCCACAGCCAAACTCa                                        >  1:755328/1‑100 (MQ=255)
                                                          gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCat                                       <  1:617416/100‑1 (MQ=255)
                                                          gCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCa                                        <  2:101679/99‑1 (MQ=255)
                                                            aGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCataa                                     <  1:2633152/100‑1 (MQ=255)
                                                            aGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCataa                                     <  1:2419153/100‑1 (MQ=255)
                                                             gATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCataat                                    >  1:567136/1‑100 (MQ=255)
                                                              gcaaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCataata                                   >  2:175759‑M2/38‑100 (MQ=255)
                                                               tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatat                                  <  1:2491612/100‑1 (MQ=255)
                                                               tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatat                                  >  2:899590/1‑100 (MQ=255)
                                                               tAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatat                                  >  2:3212276/1‑100 (MQ=255)
                                                               caaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatat                                  >  1:339602‑M2/37‑100 (MQ=255)
                                                               caaggcgttcgttgccagatgcggcgtgaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatat                                  >  1:2846000‑M2/37‑100 (MQ=255)
                                                                AAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatata                                 <  2:2124365‑M1/100‑1 (MQ=255)
                                                                 AGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatatat                                <  1:1891871‑M1/100‑1 (MQ=255)
                                                                 AGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAatatat                                >  2:674190‑M1/1‑100 (MQ=255)
                                                                  GGCGTTCACGCCGCATCTGGCAGCGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATAtt                               <  2:1898867‑M1/100‑1 (MQ=255)
                                                                    CGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTcc                             >  1:1982576‑M1/1‑100 (MQ=255)
                                                                      TTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCgg                           >  1:845714‑M1/1‑100 (MQ=255)
                                                                      TTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCgg                           >  1:2321361‑M1/1‑100 (MQ=255)
                                                                      TTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCgg                           >  1:1003823‑M1/1‑100 (MQ=255)
                                                                       TCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGc                          >  2:130120‑M1/1‑100 (MQ=255)
                                                                        CACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCa                         >  1:409176‑M1/1‑100 (MQ=255)
                                                                           gccgcATCTGGCAACGAACGCCTTGCCTGACATAAAATTTCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAata                      <  1:568734/100‑1 (MQ=255)
                                                                           gccgcATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGc                          <  2:2776212/96‑1 (MQ=255)
                                                                           gccgcATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAata                      <  1:3124962/100‑1 (MQ=255)
                                                                           gccgcATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAata                      >  2:534664/1‑100 (MQ=255)
                                                                               cATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTa                  <  2:1181876/100‑1 (MQ=255)
                                                                                aTCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAt                 <  2:1736208/100‑1 (MQ=255)
                                                                                 tCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtc                <  1:271733/100‑1 (MQ=255)
                                                                                 tCTGGCAACGAACGCCTTGACTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtc                <  1:2844169/100‑1 (MQ=255)
                                                                                   tGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcat              <  2:1704270/100‑1 (MQ=255)
                                                                                    ggCAACGAACGCCTTGCCTGACATAAAAGTGCCAGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatt             >  2:1961326/1‑100 (MQ=255)
                                                                                      cAACGAAAGCATTGCCTTACATACATGTGCCTGAGAATATCTCCTGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGCCAATATTTAtc                <  2:2414888/95‑1 (MQ=255)
                                                                                       aacgaacgCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttca          <  1:955192/100‑1 (MQ=255)
                                                                                         cgaacgCCTTGCCTTACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTAtcatttcatt        <  2:2258051/100‑1 (MQ=255)
                                                                                          gaacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTa       <  1:1898115‑M2/91‑1 (MQ=255)
                                                                                          gaacgccttGCCTGACATAAAAGTGCCAGAAAATATCTCCTGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTa       <  2:2094116‑M2/91‑1 (MQ=255)
                                                                                           aacgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTtatcatttcattta      <  1:2222392‑M2/92‑3 (MQ=255)
                                                                                            acgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaac     <  2:1153077‑M2/93‑1 (MQ=255)
                                                                                             cgccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaaca    >  2:2910924‑M2/7‑100 (MQ=255)
                                                                                              gccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaacaa   >  2:2061549‑M2/6‑100 (MQ=255)
                                                                                               ccttGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTaacaac  >  1:184936‑M2/5‑100 (MQ=255)
                                                                                                   |                                                                                               
GCAAAAAACGTTAAACGCCCGTACTGGCCTACGGTTCGAATTTGCACGAAATCGTAGGGCAGATAAGGCGTTCACGCCGCATCTGGCAACGAACGCCTTGCCTGACATAAAAGTGCCGGAGAATATCTCCGGCATTTTTATTCCACAGCCAAACTCATAATATATTCCGGCAATATTTATCATTTCATTAACAAC  >  NC_000913/3539693‑3539887

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.