New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4539648 =140 (1.150)11 (0.100) 8/162 NT 8.2% intergenic (‑147/‑1309) nanC/fimB N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
?NC_000913 4539669 = 119 (1.080)intergenic (‑168/‑1288) nanC/fimB N‑acetylnuraminic acid outer membrane channel protein/tyrosine recombinase/inversion of on/off regulator of fimA
Rejected: Frequency below cutoff threshold.

Only 100 of 191 total aligned reads displayed.

TGTAATATTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAAT  >  NC_000913/4539570‑4539768
                                                                                                    |                                                                                                   
tgtAATATTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACat                                                                                                     <  1:3231614/100‑1 (MQ=255)
 gtAATATTTTTTTTTCATTCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACatt                                                                                                    >  2:2484087/1‑100 (MQ=255)
 gtAATATTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACatt                                                                                                    >  1:2499759/1‑100 (MQ=255)
     tatTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTAttt                                                                                                >  1:460381/1‑100 (MQ=255)
     tatTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTAttt                                                                                                >  1:234597/1‑100 (MQ=255)
          aaatcaattaaacatcagaagagattttatactcaggtatttaatctggatctctgtttatttaaataatgtgaaaaatctcttttcacaTTATTtaaat                                                                                            <  2:1018920‑M2/10‑1 (MQ=255)
           aatcaattaaacatcagaagagattttatactcaggtatttaatctggatctctgtttatttaaataatgtgaaaaatctcttttcacaTTATTtaaata                                                                                           <  2:826383‑M2/11‑1 (MQ=255)
           aatcaattaaacatcagaagagattttatactcaggtatttaatctggatctctgtttatttaaataatgtgaaaaatctcttttcacaTTATTtaaata                                                                                           <  1:1854325‑M2/11‑1 (MQ=255)
             tGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAAc                                                                                        <  2:1159083/100‑1 (MQ=255)
              gCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACa                                                                                       <  2:2325362/100‑1 (MQ=255)
              gCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACa                                                                                       >  2:2314710/1‑100 (MQ=255)
              caattaaacatcagaagagattttatactcaggtatttaatctggatctctgtttatttaaataatgtgaaaaatctcttttcacaTTATTTAAATAAAc                                                                                        <  1:250098‑M2/14‑1 (MQ=255)
                cAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACaga                                                                                     <  2:890655/100‑1 (MQ=255)
                cAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATCTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACaga                                                                                     <  1:2299478/100‑1 (MQ=255)
                    cTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATc                                                                                 >  1:1932532/1‑100 (MQ=255)
                     ttATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATcc                                                                                <  2:1861065/100‑1 (MQ=255)
                     catcagaagagattttatactcaggtatttaatctggatctctgtttatttaaataaTGTGAAAA‑GAGATTTTTCACATTATTTAAATAAACAGAGATcc                                                                                <  1:1053591‑M1/43‑1 (MQ=255)
                       ataGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATccgg                                                                              >  1:1619732/1‑98 (MQ=255)
                        taGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTTTTTTATTTCTCCTGTGAAAA‑ATCTCTTTTCACTTTATTTAAATCATCAGATATCCAGa                                                                             >  2:2829761/1‑100 (MQ=255)
                        taGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGa                                                                             >  2:3273685/1‑100 (MQ=255)
                        taGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGa                                                                             >  1:1973332/1‑100 (MQ=255)
                         aGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGAt                                                                            <  1:583310/100‑1 (MQ=255)
                          gtgtCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGAtt                                                                           >  1:2603357/1‑100 (MQ=255)
                          gtgtCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGAtt                                                                           >  2:19680/1‑100 (MQ=255)
                            gtCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTaa                                                                         <  1:3108151/100‑1 (MQ=255)
                            agagattttatactcaggtatttaatctggatctctgtttatttaaataaTGTGAAAA‑GAGATTTTTCACATTATTTAAATAAACAGAGATCCAGATTa                                                                          <  2:1536889‑M1/49‑1 (MQ=255)
                              cTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAAt                                                                       <  1:121379/100‑1 (MQ=255)
                              cTTTGGCAACCGGAAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAAt                                                                       >  2:2027615/1‑100 (MQ=255)
                                  ggCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCt                                                                   >  2:1070749/1‑100 (MQ=255)
                                   gCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTg                                                                  <  1:2258982/100‑1 (MQ=255)
                                   gCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTg                                                                  <  2:2433697/100‑1 (MQ=255)
                                   gCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTg                                                                  <  2:1711481/100‑1 (MQ=255)
                                   gCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTg                                                                  >  2:1329033/1‑100 (MQ=255)
                                   gCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGAAAAATGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTg                                                                  <  2:395455/100‑1 (MQ=255)
                                    cAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGa                                                                 <  1:184231/100‑1 (MQ=255)
                                         ggTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGtata                                                            >  1:1401895/1‑100 (MQ=255)
                                           tAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATaaa                                                          >  1:2734540/1‑100 (MQ=255)
                                            aGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATaaaa                                                         >  1:1633510/1‑100 (MQ=255)
                                            aGCTGTATTTTATATTTTTTTGTATAAGGTCTCATGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATaaaa                                                         <  2:144925/100‑1 (MQ=255)
                                              cTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAAtc                                                       <  2:1560464/100‑1 (MQ=255)
                                              cTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAAtc                                                       <  1:289731/100‑1 (MQ=255)
                                              cTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAAtc                                                       <  2:522728/100‑1 (MQ=255)
                                                gTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAAtctc                                                     >  2:3196619/1‑100 (MQ=255)
                                                 tATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAAtct                                                      >  2:2132444/1‑98 (MQ=255)
                                                  aTTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCtctt                                                   >  1:2481403/1‑100 (MQ=255)
                                                   ttttATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCtcttc                                                  <  2:3165262/100‑1 (MQ=255)
                                                    tttATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCtcttct                                                 <  1:1439173/100‑1 (MQ=255)
                                                      tataTTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGa                                               >  1:419370/1‑100 (MQ=255)
                                                       atatTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGAt                                              <  1:1059352/100‑1 (MQ=255)
                                                       atatTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGAt                                              <  1:963542/100‑1 (MQ=255)
                                                       atatTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGAt                                              >  1:1274694/1‑100 (MQ=255)
                                                        tatTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATg                                             >  1:2638145/1‑100 (MQ=255)
                                                         atTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGt                                            >  1:3063364/1‑100 (MQ=255)
                                                         atTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGt                                            >  1:2786398/1‑100 (MQ=255)
                                                             ttttGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTaa                                        >  1:993017/1‑100 (MQ=255)
                                                               ttGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAAtt                                      <  1:3159983/100‑1 (MQ=255)
                                                               ttGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAAtt                                      <  1:2026016/100‑1 (MQ=255)
                                                                tGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTg                                     <  1:21068/100‑1 (MQ=255)
                                                                 gTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGa                                    >  2:769073/1‑100 (MQ=255)
                                                                 gTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGa                                    >  1:1018758/1‑100 (MQ=255)
                                                                  tataAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGAt                                   >  1:1712607/1‑100 (MQ=255)
                                                                   ataAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGAtt                                  <  2:733605/100‑1 (MQ=255)
                                                                    atttaaataaTGTGAAAAGAGAT‑TTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGAttt                                 <  1:1835680‑M1/90‑1 (MQ=255)
                                                                     aaGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTg                                >  1:181457/1‑100 (MQ=255)
                                                                     aaGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTg                                <  2:105351/100‑1 (MQ=255)
                                                                       ttaaataatgtgaaaagagatttttcacaTTATTTAAATAAACAGAGATCCAGATTAAATACTAGAGTATAAAATATCTTCTGATGTTTAATTGATTTg                                >  2:1271276‑M2/30‑99 (MQ=255)
                                                                       taaataaTGTGAAAAGAGAT‑TTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGaa                              <  2:884146‑M1/93‑1 (MQ=255)
                                                                       taaataaTGTGAAAAGAGAT‑TTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGaa                              <  1:562511‑M1/93‑1 (MQ=255)
                                                                         tctcCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTg                                >  2:2226279/1‑96 (MQ=255)
                                                                          ctcCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATg                            <  1:920470/99‑1 (MQ=255)
                                                                          ctcCTGTGAAAA‑AACTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGt                           >  1:2219256/1‑100 (MQ=255)
                                                                          aataatgtgaaaagagatttttcacaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATg                            >  1:1716999‑M2/27‑100 (MQ=255)
                                                                            ccTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTc                         >  2:1351598/1‑100 (MQ=255)
                                                                             cTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCg                        >  1:675383/1‑100 (MQ=255)
                                                                             cTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCg                        <  1:1100198/100‑1 (MQ=255)
                                                                              TGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGt                       <  2:1824507‑M1/100‑1 (MQ=255)
                                                                                TGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTaa                     >  1:3143765‑M1/1‑100 (MQ=255)
                                                                                TGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTaa                     >  2:3081713‑M1/1‑100 (MQ=255)
                                                                                 gAAAA‑ATCTCTTTTCACATTATTTCAATAAACAGAGACCCAAATTACATACTTGAGTATAAAATCACAACTCGTGTCAAATTAATTTGAATGTTcat                       >  2:201670/1‑95 (MQ=255)
                                                                                 GAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAg                    >  2:2142436‑M1/1‑100 (MQ=255)
                                                                                   AAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCt                  >  1:1070752‑M1/1‑100 (MQ=255)
                                                                                   AAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATATTAAATTGATTTGAATGTTCGTa                      <  2:2644626‑M1/96‑1 (MQ=255)
                                                                                    AA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCta                 >  1:3035166‑M1/1‑100 (MQ=255)
                                                                                     A‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCtat                >  2:1401892‑M1/1‑100 (MQ=255)
                                                                                     A‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCtat                <  1:451268‑M1/100‑1 (MQ=255)
                                                                                       aTCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCtata               <  2:460379/100‑1 (MQ=255)
                                                                                       aTCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCtata               >  2:1769094/1‑100 (MQ=255)
                                                                                       aTCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCtata               <  2:1443789/100‑1 (MQ=255)
                                                                                         ctctTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATc             <  2:1673971/100‑1 (MQ=255)
                                                                                          tctTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTTCTTTGAATGTTCGTAAGCTATATCa            >  2:3223905/1‑100 (MQ=255)
                                                                                          tctTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCa            >  1:887871/1‑100 (MQ=255)
                                                                                           ctTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCAc           >  1:1537347/1‑100 (MQ=255)
                                                                                            ttttcacaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACt          >  2:3231101‑M2/9‑100 (MQ=255)
                                                                                            ttttcacaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACt          >  1:2919972‑M2/9‑100 (MQ=255)
                                                                                               tcacaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTAc       >  1:1000311‑M2/6‑100 (MQ=255)
                                                                                               tcacaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTAc       <  2:938289‑M2/95‑1 (MQ=255)
                                                                                                cacaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTAc       >  2:1266438‑M2/5‑99 (MQ=255)
                                                                                                 acaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTc     <  2:3019083‑M2/97‑1 (MQ=255)
                                                                                                 acaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTc     >  1:2364483‑M2/4‑100 (MQ=255)
                                                                                                 acaTTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTc     <  2:2364473‑M2/97‑1 (MQ=255)
                                                                                                    |                                                                                                   
TGTAATATTTTTTTGCCAGGCTTATAGTGTCTTTGGCAACCGGTAGCTGTATTTTATATTTTTTTGTATAAGGTCTCCTGTGAAAA‑ATCTCTTTTCACATTATTTAAATAAACAGAGATCCAGATTAAATACCTGAGTATAAAATCTCTTCTGATGTTTAATTGATTTGAATGTTCGTAAGCTATATCACTTACTCAAT  >  NC_000913/4539570‑4539768

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.