| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4601572 = | 145 (1.170) | 10 (0.090) | 8/162 | NT | 7.4% | intergenic (‑55/+52) | dnaT/yjjB | DNA biosynthesis protein (primosomal protein I)/DUF3815 family inner membrane protein |
| ? | NC_000913 | 4601608 = | 119 (1.060) | intergenic (‑91/+16) | dnaT/yjjB | DNA biosynthesis protein (primosomal protein I)/DUF3815 family inner membrane protein | |||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4601678‑4601572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgtgtgCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG > NC_000913/4601608‑4601706 CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGGGACAGCCTCCTCTCCT < 1:2222223/100‑1CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCT > 2:885630/1‑100CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCT > 1:362635/1‑100CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCT > 1:2264782/1‑100CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCACAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCT > 2:803185/1‑100 ATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTC > 1:878086/1‑100 ATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTC < 1:2019827/100‑1 CGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCG < 2:1393530/100‑1 GGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGT > 1:2773726/1‑100 GGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGT > 2:1516011/1‑100 GGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGT > 1:2596691/1‑100 GGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGT > 1:1354661/1‑100 GTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTG < 2:271905/100‑1 TCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGT < 2:1782071/100‑1 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCTTCTCCTCCGTGcg < 2:2264799/100‑3 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG < 1:26519/100‑1 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG > 2:596836/1‑100 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG < 1:735225/100‑1 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG < 1:1497469/100‑1 CTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAACTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG < 1:2086112/100‑1 CCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCA > 1:2532440/1‑100 CGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATACTCCAGGA > 2:1450319/1‑100 CGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGA > 2:3206192/1‑100 TTAAGCACACGGAGGAGAGACAGCCTCCTCTGCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATG > 2:2249902/1‑100 AGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAA > 1:2408975/1‑100 GCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAA > 2:2150012/1‑100 CACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGAC > 2:1307306/1‑100 CACGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGAC > 1:2239677/1‑100 CGGATGAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCG > 2:1851287/1‑100 GAGAGACAGCCTCCTCTCCTCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACAGATGGA > 1:1591881/1‑100 TCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGAT < 2:408161/100‑1 TCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGAT < 1:1286774/100‑1 TCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGAT < 1:271905/100‑1 TCCGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGAT < 1:1926781/100‑1 TCCGTGTGCTTAAGCGAGGCAATATTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGAT > 2:2558027/1‑100 CGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGA < 2:2239694/100‑1 CGTGTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGA < 1:3256229/100‑1 GTGCTTAAGCGAGGCAATTTTATACGCGATGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGC < 2:1479339/100‑1 GTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGC < 2:1253649/100‑1 GTGCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGC < 2:743600/100‑1 GTGCTTAAGCGAGGCAATTTTATACGCGAGGGAGCTTGCGGTACAAACATAGTCCAGGGATGGAAAGACGGATGGATAACGGACCAACAATCGATGAAG > 2:584476/1‑99 GCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG > 1:1072895/1‑100 GCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCT > 2:2825336/1‑99 CATCGGTCTTTCCATTCCTGGATTATGGTTGTACCGCAAGCGCCCTCGCGTATAAAATTGCCTCGCTTAAGCACACGGATGAGAGACAGCCTCCTCTCCTCCGTGTG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4601678‑4601572‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tccgtgtgCTTAAGCGAGGCAATTTTATACGCGAGGGCGCTTGCGGTACAACCATAATCCAGGAATGGAAAGACCGATGGATAACGCACCAACAATCGATGAAGCTG > NC_000913/4601608‑4601706 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |