| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 437120 = | NA (NA) | 5 (0.040) | 4/162 | NT | NA | noncoding (1/37 nt) | REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 437153 = | NA (NA) | noncoding (34/37 nt) | REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP38 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/437225‑437120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaggcCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAA > NC_000913/437153‑437250 AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACA < 2:2418748/100‑1AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACA > 2:1274605/1‑100AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACA > 2:1035226/1‑100AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACA < 1:83048/100‑1 GGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAG < 1:108388/100‑1 GGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAG < 2:756867/100‑1 GGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAG > 2:2881255/1‑100 GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGn < 2:30663/100‑2 GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG < 1:1196209/100‑1 GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG > 2:1958300/1‑100 GAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG > 2:1917333/1‑100 AACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGG < 1:316211/99‑1 GTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAAGCCTGGACTCTTATTTAAATCCTACGACAGGACGCGGTTTATcc > 1:1771256/1‑96 ATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGC > 1:15740/1‑96 ATTTAAATAAGAGACCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTT > 1:15133/1‑100 AGGCCTGATGAGACGTGACAAGCGTCACATCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTG > 2:203513/1‑100 CCTGATGAGACGTGACAAGCGTCACATCAGGCCTGAACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTC > 1:639067/1‑100 CATCAGTCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGC < 2:1449792/100‑1 TCAGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGT > 2:2299005/1‑100 AGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTC < 1:389649/100‑1 AGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTC < 2:3056433/100‑1 AGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTC > 1:3139441/1‑100 AGGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTC < 1:1071913/100‑1 GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCA > 2:1894823/1‑100 GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCA > 1:2894557/1‑100 GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCA > 2:2686084/1‑100 GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCA > 2:3019163/1‑100 GGCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTC > 2:1221846/1‑99 GCCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAA > 2:923879/1‑100 AGCCGGAACAGATTGCCGAACTGGAAACGCCGTATAAACCGCATCCTGTCGTAGGATTTAAATAAGAGTCCAGGCCTGATGAGACGTGACAAGCGTCACATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/437225‑437120‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catcaggcCTGGACTCTTATTTAAATCCTACGACAGGATGCGGTTTATACGGCGTTTCCAGTTCGGCAATCTGTTCCGGCTTCAAAGTGATATCCACCGCGTTCAA > NC_000913/437153‑437250 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |