New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1167402 =	NA (NA)	11 (0.100)	8/162	NT	NA	noncoding (1/30 nt)	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	1167432 =	NA (NA)					intergenic (+43/‑167)	ndh/ycfJ	respiratory NADH dehydrogenase 2/cupric reductase/uncharacterized protein

TGGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1167508‑1167402 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC  >  NC_000913/1167432‑1167529                                                                                                                                                                                                               TGGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCAC                                                                                                           <  1:790216/100‑1  GGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACA                                                                                                          >  1:3081506/1‑100  GGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACA                                                                                                          <  1:229968/100‑1   GAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACAT                                                                                                         >  1:1976980/1‑100     AATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCC                                                                                                       <  2:1650559/100‑1      ATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCG                                                                                                      <  2:2884811/100‑1      ATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCG                                                                                                      <  1:2490370/100‑1        ACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC                                                                                                    >  1:2683176/1‑100         CTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCn                                                                                                    <  2:1595549/99‑2                                                                            AGGGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAA                                >  2:710596/1‑100                                                                              GGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGT                              >  2:3124293/1‑100                                                                              GGCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGT                              >  2:3120625/1‑100                                                                               GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTA                             >  2:1639807/1‑100                                                                               GCGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTA                             >  2:827320/1‑100                                                                                CGGATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGTCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAT                            >  1:2367514/1‑100                                                                                  GATGAGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTT                          >  1:589750/1‑100                                                                                      AGGCGTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAG                      >  2:722303/1‑100                                                                                          GTTTATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCAT                  >  1:2828056/1‑100                                                                                             TATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCC               <  1:3120598/100‑1                                                                                             TATGCCACATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCC               <  1:3124267/100‑1                                                                                                    CATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTT        >  1:3209590/1‑100                                                                                                    CATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTT        >  1:390011/1‑100                                                                                                     ATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTT       <  1:1512914/100‑1                                                                                                     ATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTT       >  1:2751319/1‑100                                                                                                      cCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGAGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTGCCGCGCTTTT      >  1:2191978/2‑100                                                                                                      TCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTT      >  2:2926791/1‑100                                                                                                      TCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTT        >  2:2600870/1‑98                                                                                                       CCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTC     >  1:3089797/1‑100                                                                                                       CCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTC     <  2:541527/100‑1                                                                                                        CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCA    <  1:340145/100‑1                                                                                                        CGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCA    >  1:1591871/1‑100                                                                                                          CCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC  >  1:2516104/1‑100                                                                                                          CCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC  <  1:1382428/100‑1                                                                                                          CCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC  <  2:944435/100‑1                                                                                                          CCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCACTTTTCATC  >  1:2816683/1‑100                                                                                                          CCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCATTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC  >  1:1858829/1‑100                                                                                                                                                                                                               TGGAAATACTTAAGGATTCGGAGGAGTCTGAAAGGATGCCTGATACAACGCGGCTGCCGATCGCGCTGTTCCTCAAGGGCGGATGAGGCGTTTATGCCACATCCGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1167508‑1167402 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATC  >  NC_000913/1167432‑1167529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.