BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1167402 =	NA (NA)	11 (0.100)	8/162	NT	NA	noncoding (1/30 nt)	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP103 (repetitive extragenic palindromic) element; contains 1 REP sequences
*	?	NC_000913	1167432 =	NA (NA)	11 (0.100)	8/162	NT	NA	intergenic (+43/‑167)	ndh/ycfJ	respiratory NADH dehydrogenase 2/cupric reductase/uncharacterized protein

Only 100 of 135 total aligned reads displayed.

TGATGCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCTT  >  NC_000913/1167334‑1167531

ttaaggattcggaggagtctgaaaggatgcctgatacaacgcggctgccgatcgcgctgttcctcaagGGCGGATGTGGCATAAACGCCTCATCCGCCCt                                                                                                    >  2:710596‑M1/69‑100 (MQ=255)

   tgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTgn                                                                                                 <  2:108/100‑2 (MQ=255)

   tgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGa                                                                                                 >  2:160213/1‑100 (MQ=255)

   tgCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGa                                                                                                 >  2:1976994/1‑100 (MQ=255)

          ggggAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAg                                                                                          >  2:605531/1‑100 (MQ=255)

            ggAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGGCTCATCCGCCCTTGAGGAACAgcg                                                                                        >  1:1469646/1‑100 (MQ=255)

              aGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGcgcg                                                                                      <  1:1906444/100‑1 (MQ=255)

                 aTTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATc                                                                                   >  1:1490615/1‑100 (MQ=255)

                 aTTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATc                                                                                   >  1:1305105/1‑100 (MQ=255)

                 aTTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATc                                                                                   >  2:1264800/1‑100 (MQ=255)

                 aTTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATc                                                                                   >  2:1655472/1‑100 (MQ=255)

                  ttAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCg                                                                                  <  2:2153460/100‑1 (MQ=255)

                  ttAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCg                                                                                  >  1:944432/1‑100 (MQ=255)

                  ttAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCg                                                                                  <  2:418087/100‑1 (MQ=255)

                   tAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCgg                                                                                 >  2:2452197/1‑100 (MQ=255)

                    aaCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGc                                                                                >  2:3130950/1‑100 (MQ=255)

                     aCCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCa                                                                               <  1:188582/100‑1 (MQ=255)

                      ccGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAg                                                                              <  1:2191819/100‑1 (MQ=255)

                      ccGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAg                                                                              >  2:1255526/1‑100 (MQ=255)

                      ccGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAg                                                                              >  1:2896905/1‑100 (MQ=255)

                         cgTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCcg                                                                           <  1:3115176/100‑1 (MQ=255)

                           ttATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCcgcg                                                                         <  1:1584584/100‑1 (MQ=255)

                            tATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGt                                                                        <  1:281960/100‑1 (MQ=255)

                             aTCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGtt                                                                       <  1:3146474/100‑1 (MQ=255)

                             aTCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGtt                                                                       >  1:2167909/1‑100 (MQ=255)

                              tccgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTg                                                                      >  1:3199923/1‑100 (MQ=255)

                               ccgtccgCGTTCGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGt                                                                     >  1:2095941/1‑100 (MQ=255)

                                cgtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTa                                                                    <  2:134780/100‑1 (MQ=255)

                                 gtccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTAt                                                                   >  2:475875/1‑100 (MQ=255)

                                  tccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATc                                                                  >  2:1326401/1‑100 (MQ=255)

                                   ccgCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCa                                                                 >  1:1854558/1‑100 (MQ=255)

                                    cgcgTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAg                                                                <  2:2964590/100‑1 (MQ=255)

                                        tttGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATGCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCa                                                             >  1:3037397/1‑99 (MQ=255)

                                          tGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATcc                                                          <  1:4709/100‑1 (MQ=255)

                                           gAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCt                                                         >  2:2488933/1‑100 (MQ=255)

                                           gAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCt                                                         >  1:2405254/1‑100 (MQ=255)

                                             aGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCttt                                                       <  1:232158/100‑1 (MQ=255)

                                              gTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCGGGCATCCTTTc                                                      <  1:1013473/100‑1 (MQ=255)

                                               ttGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCa                                                     <  2:2723874/100‑1 (MQ=255)

                                                  cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  <  2:2060884/100‑1 (MQ=255)

                                                  cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  >  2:2783064/1‑100 (MQ=255)

                                                  cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  >  2:2471929/1‑100 (MQ=255)

                                                  cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  <  2:3264133/100‑1 (MQ=255)

                                                  cATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGAc                                                  <  2:3269034/100‑1 (MQ=255)

                                                    ttAATCGACGTACACTCGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGActc                                                >  2:2818958/1‑100 (MQ=255)

                                                      aaTCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGActcct                                              <  2:3251860/100‑1 (MQ=255)

                                                      aaTCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGActcct                                              >  1:1538085/1‑100 (MQ=255)

                                                       aTCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGActcctc                                             >  2:2165998/1‑100 (MQ=255)

                                                        ncGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTCGTATCAGGCATCCTTTCAGACtcctcc                                            >  1:1208495/2‑100 (MQ=255)

                                                         cGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGACAGCCGCGTTGTATCAGGCATCCTCTCAGACTCCTCCg                                           <  1:2065920/100‑1 (MQ=255)

                                                            cGTACACTGGCGGATGTGGCATAACCGCCTCATCCGCCCTTGAGGAACAGCGCCATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAAt                                        <  1:2503146/100‑1 (MQ=255)

                                                             gTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATc                                       >  2:2683199/1‑100 (MQ=255)

                                                              tACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATcc                                      <  1:910748/100‑1 (MQ=255)

                                                              tACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATcc                                      >  2:442530/1‑100 (MQ=255)

                                                                cacTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCtt                                    <  1:2325289/100‑1 (MQ=255)

                                                                 acTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTa                                   <  1:1801593/100‑1 (MQ=255)

                                                                  cTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTaa                                  >  1:1677400/1‑100 (MQ=255)

                                                                  agggcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTaa                                  >  2:710596‑M2/33‑100 (MQ=255)

                                                                    nGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAg                                 <  2:1595549‑M1/98‑1 (MQ=255)

                                                                    ggcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGt                                >  2:3124293‑M2/31‑100 (MQ=255)

                                                                    ggcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGt                                >  2:3120625‑M2/31‑100 (MQ=255)

                                                                    GGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGt                                >  1:2683176‑M1/1‑100 (MQ=255)

                                                                     gcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTa                               >  2:827320‑M2/30‑100 (MQ=255)

                                                                     gcggatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTa                               >  2:1639807‑M2/30‑100 (MQ=255)

                                                                      CGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAt                              <  2:2884811‑M1/100‑1 (MQ=255)

                                                                      CGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAt                              <  1:2490370‑M1/100‑1 (MQ=255)

                                                                       GGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAtt                             <  2:1650559‑M1/100‑1 (MQ=255)

                                                                        gatgaggcgtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTAttt                            >  1:589750‑M2/27‑100 (MQ=255)

                                                                         ATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTc                           >  1:1976980‑M1/1‑100 (MQ=255)

                                                                          TGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTcc                          >  1:3081506‑M1/1‑100 (MQ=255)

                                                                          TGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTcc                          <  1:229968‑M1/100‑1 (MQ=255)

                                                                           GTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCa                         <  1:790216‑M1/100‑1 (MQ=255)

                                                                            tgGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAg                        >  2:2803596/1‑100 (MQ=255)

                                                                            tgGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAg                        >  1:1589150/1‑100 (MQ=255)

                                                                            nggCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAg                        >  1:2975278/2‑100 (MQ=255)

                                                                              gCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGcc                      <  1:430368/100‑1 (MQ=255)

                                                                               cATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCa                     >  1:277410/1‑100 (MQ=255)

                                                                                gtttatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCAt                    >  1:2828056‑M2/19‑100 (MQ=255)

                                                                                   tatgccacatccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTcc                 <  1:3120598‑M2/85‑1 (MQ=255)

                                                                                   aaCGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTcc                 >  1:3288437/1‑100 (MQ=255)

                                                                                   aaCGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTcc                 <  2:422723/100‑1 (MQ=255)

                                                                                   aaCGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTcc                 >  2:2917648/1‑100 (MQ=255)

                                                                                     cGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCcg               >  2:2908201/1‑100 (MQ=255)

                                                                                      gCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCcgc              <  2:1641962/100‑1 (MQ=255)

                                                                                       ccTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCcgcg             >  2:1634328/1‑100 (MQ=255)

                                                                                         tCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCt           <  2:1391418/100‑1 (MQ=255)

                                                                                         tCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCt           <  2:573036/100‑1 (MQ=255)

                                                                                          catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCtt          >  1:390011‑M2/9‑100 (MQ=255)

                                                                                          catccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCtt          >  1:3209590‑M2/9‑100 (MQ=255)

                                                                                           atccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCttt         <  1:1512914‑M2/93‑1 (MQ=255)

                                                                                           atccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCttt         >  1:2751319‑M2/8‑100 (MQ=255)

                                                                                            tccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCtttt        >  2:2926791‑M2/7‑100 (MQ=255)

                                                                                            tccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCtt          >  2:2600870‑M2/7‑98 (MQ=255)

                                                                                            cccgccCTTGAGGAACAGCGCGATCGGCAGCCGAGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTGCCGCGCtttt        >  1:2191978‑M2/7‑100 (MQ=255)

                                                                                             ccgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTc       <  2:541527‑M2/95‑1 (MQ=255)

                                                                                              cgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCa      >  1:1591871‑M2/5‑100 (MQ=255)

                                                                                              cgccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCa      <  1:340145‑M2/96‑1 (MQ=255)

                                                                                                ccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATc    <  1:1382428‑M2/98‑1 (MQ=255)

                                                                                                ccCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATc    <  2:944435‑M2/98‑1 (MQ=255)

                                                                                                  cTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCAtctt  <  1:1326397/100‑1 (MQ=255)

TGATGCTGGTGGGGAGTATTAACCGCGTTATCCGTCCGCGTTTGAAGTTGCATTAATCGACGTACACTGGCGGATGTGGCATAAACGCCTCATCCGCCCTTGAGGAACAGCGCGATCGGCAGCCGCGTTGTATCAGGCATCCTTTCAGACTCCTCCGAATCCTTAAGTATTTCCAGCCATTCCCGCGCTTTTCATCTT  >  NC_000913/1167334‑1167531

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.