New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2232735	NA (NA)	3 (0.030)	3/166	NT	NA	intergenic (+7/‑143)	cdd/sanA	cytidine/deoxycytidine deaminase/DUF218 superfamily vancomycin high temperature exclusion protein
	?	NC_000913	= 2232765	NA (NA)					noncoding (30/34 nt)	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP155 (repetitive extragenic palindromic) element; contains 1 REP sequences

GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2232642‑2232735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC  <  NC_000913/2232765‑2232661                                                                                                                                                                                                         GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGA                                                                                                     <  1:560183/100‑1                        TGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGG                                                                              <  1:3042740/100‑1                         GCCACCTCCGCAACGCTGAAAGCTCTCGGGTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGC                                                                             <  1:2020774/100‑1                                CCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTGCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGC                                                                      <  1:2386947/100‑1                                                                                               GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC       <  1:1242253/100‑1                                                                                               GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGC       >  2:90921/1‑100                                                                                               GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGG        <  1:3230961/99‑1                                                                                                CCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCA      >  1:3133903/1‑100                                                                                                CCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCA      >  1:961571/1‑100                                                                                                 CGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCAT     >  1:568863/1‑100                                                                                                  GGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGACGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATC    <  1:491672/100‑1                                                                                                  GGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATC    <  1:517620/100‑1                                                                                                   GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC   <  1:2684482/100‑1                                                                                                   GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC   <  2:2774361/100‑1                                                                                                   GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCC   <  2:285374/100‑1                                                                                                   GACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCCTTGCGGAGGTGGCATCC   <  1:1157390/100‑1                                                                                                    ACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC  >  2:1183066/1‑100                                                                                                    ACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC  <  2:1231313/100‑1                                                                                                    ACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC  <  2:735585/100‑1                                                                                                                                                                                                         GATGCGCCGTTGATTCAGTGGGATGCCACCTCCGCAACGCTGAAAGCTCTCGGCTGTCACAGTATCGACCGAGTGCTTCTCGCTTAAGCCTGGTgccgga‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2232642‑2232735 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCGGACAAGGCGTTCACGCCGCATCCGGCACCAGGCTTAAGCGAGAAGCACTCGGTCGATACTGTGACAGCCGAGAGCTTTCAGCGTTGCGGAGGTGGCATCCC  <  NC_000913/2232765‑2232661

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.