New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3650792NA (NA)6 (0.050) 5/166 NT NA noncoding (81/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3650805 NA (NA)noncoding (94/100 nt) RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP262 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 190 total aligned reads displayed.

AAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGT  >  NC_000913/3650693‑3650891
                                                                                                   |                                                                                                   
aaaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGA                                                                                                     <  2:2087380‑M1/100‑1 (MQ=255)
 aaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAc                                                                                                    <  1:1144909/100‑1 (MQ=255)
 aaaGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAc                                                                                                    <  2:1601354/100‑1 (MQ=255)
   aGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAg                                                                                                  <  2:359677/100‑1 (MQ=255)
      gcgcTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCg                                                                                               <  1:681815/100‑1 (MQ=255)
      gcgcTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCg                                                                                               <  2:649628/100‑1 (MQ=255)
       cgcTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGt                                                                                              >  2:2032311/1‑100 (MQ=255)
       cgcTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGt                                                                                              >  2:3167453/1‑100 (MQ=255)
         cTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAg                                                                                            >  2:3332130/1‑100 (MQ=255)
         cTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAg                                                                                            >  2:1581570/1‑100 (MQ=255)
            tatttatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAgcgc                                                                                         >  2:2353646/1‑100 (MQ=255)
            tatttatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAgcgc                                                                                         >  1:54688/1‑100 (MQ=255)
             atttatGTCTGATGCGACGCTGGCGCGTCTTATCCGACTTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCATGACAGGCGTAGCGCa                                                                                        >  1:93396/1‑100 (MQ=255)
             atttatGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCa                                                                                        >  1:2401075/1‑100 (MQ=255)
              tttATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAt                                                                                       >  1:2983345‑M2/1‑99 (MQ=255)
               ttATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtc                                                                                      >  1:451817‑M2/1‑98 (MQ=255)
                tATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtca                                                                                     <  2:2066538‑M2/100‑4 (MQ=255)
                tATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtca                                                                                     <  2:1794448‑M2/100‑4 (MQ=255)
                tATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtca                                                                                     <  2:1789774‑M2/100‑4 (MQ=255)
                 aTGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtcag                                                                                    <  1:2092345‑M2/100‑5 (MQ=255)
                  ggtcggataagacgcgccagcgtcgcatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAgg                                                                                   >  1:1731839‑M2/34‑100 (MQ=255)
                   gTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCAtcaggc                                                                                  >  1:200119‑M2/1‑94 (MQ=255)
                    tCGGATGCGACGCTGGCGCGTCTTATGCGACCTACATAGTTATGAAAATTCGATTAATAGTATGTTATTTGTAGGCCTGAtgcgctacgcctgtcaggcc                                                                                 <  1:2507189‑M1/100‑21 (MQ=255)
                      ggataagacgcgccagcgtcttatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAt                                                                               >  1:378160‑M2/30‑100 (MQ=255)
                      ggataagacgcgccagcgtcttatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAt                                                                               >  2:1278600‑M2/30‑100 (MQ=255)
                      ggataagacgcgccagcgtcgcatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAt                                                                               >  2:2838248‑M2/30‑100 (MQ=255)
                      ggATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAtgcgctacgcctgtcaggccta                                                                               <  1:999261‑M1/100‑23 (MQ=255)
                      ggATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAtgcgctacgcctgtcaggccta                                                                               <  1:3244762‑M1/100‑23 (MQ=255)
                      GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAt                                                                               >  2:2172719‑M1/1‑100 (MQ=255)
                      GGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAt                                                                               <  2:2553515‑M1/100‑1 (MQ=255)
                       gATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAtgcgctacgcctgtcaggcctac                                                                              <  2:2124752‑M1/100‑24 (MQ=255)
                         taagacgcgccagcgtcttatccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGAtttt                                                                            >  1:1649511‑M2/27‑100 (MQ=255)
                         tGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGAtgcgctacgcctgtcaggcctacaa                                                                            <  2:2500890‑M1/100‑26 (MQ=255)
                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGTCCTGACAAGCGTAGCGCATCAGGCGa                                                                                >  1:2798555/1‑94 (MQ=255)
                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                                                                          >  2:1819344/1‑100 (MQ=255)
                           cGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGc                                                                          <  2:524696/100‑1 (MQ=255)
                               gCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTAtt                                                                      <  2:120774/100‑1 (MQ=255)
                                 tGGCGCGTCTTATCCGACCTACAAAGTTATGAATATTCGATGAATAGTATGTTATTTGTAGGTCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTa                                                                    <  1:2837299/100‑1 (MQ=255)
                                  ggCGCGTCTTATCAGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTac                                                                   >  1:2069118/1‑100 (MQ=255)
                                    cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                                                                 <  2:607677/100‑1 (MQ=255)
                                    cgcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTacac                                                                 <  1:856507/100‑1 (MQ=255)
                                     gcgTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTAcaca                                                                <  1:76273/100‑1 (MQ=255)
                                          ttATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTGCACAGTACt                                                           <  1:1247707/100‑1 (MQ=255)
                                             tccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTccc                                                        <  2:2576104‑M2/94‑1 (MQ=255)
                                              ccgacCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCt                                                       >  2:3279330‑M2/6‑100 (MQ=255)
                                                  cCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGt                                                   <  1:2547652‑M2/99‑1 (MQ=255)
                                                   cTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTg                                                  >  1:3272589/1‑100 (MQ=255)
                                                   cTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTg                                                  <  1:2930924/100‑1 (MQ=255)
                                                   cTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTg                                                  <  2:2372599/100‑1 (MQ=255)
                                                    tACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTga                                                 <  1:1278596/100‑1 (MQ=255)
                                                    tACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTga                                                 <  1:1358107/100‑1 (MQ=255)
                                                    tACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTga                                                 >  2:2786925/1‑100 (MQ=255)
                                                     aCAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTgag                                                >  1:663914/1‑100 (MQ=255)
                                                     aCAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTgag                                                <  2:2081299/100‑1 (MQ=255)
                                                         aGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTc                                            <  1:2423195/100‑1 (MQ=255)
                                                          gTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTcc                                           >  2:773874/1‑100 (MQ=255)
                                                          gTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTcc                                           <  1:2819874/100‑1 (MQ=255)
                                                            tATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCaa                                         <  2:2241410/100‑1 (MQ=255)
                                                             aTGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAAt                                        >  1:1513564/1‑100 (MQ=255)
                                                              ngAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAAtt                                       >  1:1171355/2‑100 (MQ=255)
                                                               gAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTa                                      >  1:2630655/1‑100 (MQ=255)
                                                               gAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTa                                      >  2:471701/1‑100 (MQ=255)
                                                                gaaaTTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTan                                     <  2:1136858/99‑2 (MQ=255)
                                                                aaaaTTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTAt                                     <  1:1757903/100‑1 (MQ=255)
                                                                aaaaTTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCACTGCGTGAGATTCCAATTAt                                     >  1:1032036/1‑100 (MQ=255)
                                                                      cGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTc                               <  2:1547094/100‑1 (MQ=255)
                                                                       gATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTcc                              >  1:1895899/1‑100 (MQ=255)
                                                                        aTGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCa                             <  2:1769594/100‑1 (MQ=255)
                                                                         tGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAg                            >  2:252185/1‑100 (MQ=255)
                                                                          gAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGc                           <  1:290711/100‑1 (MQ=255)
                                                                             tAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATg                        <  1:3324535/100‑1 (MQ=255)
                                                                              aGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATgg                       <  2:2709020/100‑1 (MQ=255)
                                                                              aGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATgg                       <  1:2728457/100‑1 (MQ=255)
                                                                               gTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCa                          >  1:2971407/1‑96 (MQ=255)
                                                                               gTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgt                      >  1:231117/1‑100 (MQ=255)
                                                                                tATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtg                     <  2:1649518/100‑1 (MQ=255)
                                                                                tATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtg                     >  2:820531/1‑100 (MQ=255)
                                                                                 aTGTTATTTGTAGGCCTGACAGTCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGgtgt                    >  1:2609980/1‑100 (MQ=255)
                                                                                   gTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTAt                  <  1:3123153/100‑1 (MQ=255)
                                                                                    ttATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTGTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATc                 <  1:2353629/100‑1 (MQ=255)
                                                                                     tATTTGTAGGCCTGACAGTCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCa                <  2:2610001/100‑1 (MQ=255)
                                                                                      aTTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAg               <  1:108407/100‑1 (MQ=255)
                                                                                        ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTg             <  1:1213640/100‑1 (MQ=255)
                                                                                        ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTg             <  2:1350711/100‑1 (MQ=255)
                                                                                        ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTg             >  1:196624/1‑100 (MQ=255)
                                                                                        ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTg             <  2:2201606/100‑1 (MQ=255)
                                                                                        ttGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACCCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTg             <  2:677509/100‑1 (MQ=255)
                                                                                          gTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAg           >  1:2243126/1‑100 (MQ=255)
                                                                                            aGGCCTGACAGGCGTAGCGCAtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccg         <  1:933841‑M2/100‑80 (MQ=255)
                                                                                            aGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgct         <  2:2926958/100‑1 (MQ=255)
                                                                                            aGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAgct         <  2:1033797/100‑1 (MQ=255)
                                                                                              gCCTGAtgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgac       <  1:3314083‑M1/100‑95 (MQ=255)
                                                                                              gCCTGAtgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgac       <  1:2143638‑M1/100‑95 (MQ=255)
                                                                                              gCCTGAtgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgac       <  2:2106418‑M1/100‑95 (MQ=255)
                                                                                                cTGAtgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgacat     <  1:2590395‑M1/100‑97 (MQ=255)
                                                                                                 tGACAGGCGTAGCGCATCAGGCGATATTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTTTGGCGTCCAGCATGGTGGATCAGTGAGCTTCTTa    >  1:1561190/1‑100 (MQ=255)
                                                                                                  gACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAg   >  2:3137370/1‑100 (MQ=255)
                                                                                                  gACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAg   <  2:1245327/100‑1 (MQ=255)
                                                                                                   atgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgacataaa  <  2:159‑M1/100‑100 (MQ=255)
                                                                                                   atgcgctacgcctgtcaggcctacaaataacatactattcatcgaattttcataactttgtaggtcggataagacgcgccagcgtcgcatccgacataaa  <  1:1245323‑M1/100‑100 (MQ=255)
                                                                                                   |                                                                                                   
AAAAGTGCGCTTTATTTATGTCGGATGCGACGCTGGCGCGTCTTATCCGACCTACAAAGTTATGAAAATTCGATGAATAGTATGTTATTTGTAGGCCTGACAGGCGTAGCGCATCAGGCGATTTTGCTATTTACACAGTACTCCCTGCGTGAGATTCCAATTATCGCGTCCAGCATGGTGTATCAGTGAGCTGCTTAGT  >  NC_000913/3650693‑3650891

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.