New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4008401 =NA (NA)4 (0.040) 3/164 NT NA noncoding (5/34 nt) REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4008431 = NA (NA)intergenic (+54/+8) rhtC/rhtB threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump

Only 100 of 169 total aligned reads displayed.

CTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCT  >  NC_000913/4008303‑4008500
                                                                                                  |                                                                                                   
ggaccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGt                                                                                                    <  2:3276388‑M1/2‑1 (MQ=255)
ggaccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGt                                                                                                    >  1:2498763‑M1/99‑100 (MQ=255)
  ggCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCg                                                                                                  >  2:226342/1‑100 (MQ=255)
  ggCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCg                                                                                                  >  2:3105491/1‑100 (MQ=255)
  accaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCg                                                                                                  >  1:566552‑M1/97‑100 (MQ=255)
   ccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCgg                                                                                                 >  1:2880454‑M1/96‑100 (MQ=255)
   ccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCgg                                                                                                 <  1:3190846‑M1/5‑1 (MQ=255)
   ccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCgg                                                                                                 <  2:2723904‑M1/5‑1 (MQ=255)
   ccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCgg                                                                                                 <  1:1190119‑M1/5‑1 (MQ=255)
   ccaaagcagatgaaggcgctgaataagattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCgg                                                                                                 <  2:409579‑M1/5‑1 (MQ=255)
     gAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGAt                                                                                               >  1:2983092/1‑100 (MQ=255)
      aaGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATa                                                                                              <  1:1383517/100‑1 (MQ=255)
       aGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATaa                                                                                             >  2:503419/1‑100 (MQ=255)
        gTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAg                                                                                            >  2:257281/1‑100 (MQ=255)
         tGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAgg                                                                                           <  2:2837589/100‑1 (MQ=255)
          ggATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGc                                                                                          >  1:1357315/1‑100 (MQ=255)
          ggATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGc                                                                                          >  1:1149399/1‑100 (MQ=255)
           gATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCg                                                                                         >  1:2247377/1‑100 (MQ=255)
           gATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCg                                                                                         >  1:1623231/1‑100 (MQ=255)
            aTTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGt                                                                                        >  1:2422286/1‑100 (MQ=255)
              tGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGttt                                                                                      <  1:416694/100‑1 (MQ=255)
                 tGGTTTTGCCGGGGCGTTATTTGTCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTa                                                                                     <  1:717404/98‑1 (MQ=255)
                 tGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAcg                                                                                   <  1:2945429/100‑1 (MQ=255)
                  ggTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTAcgc                                                                                  <  1:2095400/100‑1 (MQ=255)
                   gTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTCTAcgcc                                                                                 >  1:1336493/1‑100 (MQ=255)
                       tGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCAt                                                                             >  2:2934220/1‑100 (MQ=255)
                         ccGGTGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAAcgccttatcc                                                                           <  1:1455414/100‑7 (MQ=37)
                         ccGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATcc                                                                           <  2:246988/100‑1 (MQ=255)
                         ccGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATcc                                                                           >  1:6496/1‑100 (MQ=255)
                         ccGGGGCGTTATTTGCCGGATTTGGCATTCATGTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATcc                                                                           >  2:3174890/1‑100 (MQ=255)
                          cGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCg                                                                          >  2:2589612/1‑100 (MQ=255)
                           ggggCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGa                                                                         <  1:1650116/100‑1 (MQ=255)
                            agattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGAc                                                                        >  1:2126458‑M1/71‑100 (MQ=255)
                            agattttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGAc                                                                        >  2:1383483‑M1/71‑100 (MQ=255)
                             ggCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACa                                                                       <  2:2104246/100‑1 (MQ=255)
                              gCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGActt                                                                      <  2:85577/100‑3 (MQ=25)
                              gCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACat                                                                      <  2:595023/100‑1 (MQ=255)
                               cGTTATTTGCCGGATTTGGCAGTCATTAGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGGCGGATAAGGCGTTTACGCCGCATCCGACatt                                                                     >  1:1205281/1‑100 (MQ=255)
                                gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                    >  1:2705690/1‑100 (MQ=255)
                                gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                    >  1:1597185/1‑100 (MQ=255)
                                 ttATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATGCGGCGTAAACGCCTTATCCGActtact                                                                   <  1:1163080/100‑6 (MQ=25)
                                 ttATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACattat                                                                   >  2:348332/1‑100 (MQ=255)
                                   aTTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTATTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttt                                                                 >  1:1664771/1‑100 (MQ=255)
                                    tttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAtttt                                                                <  1:1349676/100‑1 (MQ=255)
                                     ttGCGGGATTTGGCATTCATTTGTTTATTTCGCGGTCATGACAGACGCGTCATCAGAGTAAGTCGGATAAGGCTTTGACGCCGCATCAGACATGAtttt                                                                >  1:1398745/1‑99 (MQ=255)
                                     ttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttttt                                                               >  2:1760358/1‑100 (MQ=255)
                                      tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                              <  1:1262162/100‑1 (MQ=255)
                                      tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                              >  1:86794/1‑100 (MQ=255)
                                      ctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                              >  1:479804‑M1/61‑100 (MQ=255)
                                        ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            <  2:386897/100‑1 (MQ=255)
                                        ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                            >  2:307050/1‑100 (MQ=255)
                                             tttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATg                                                       >  1:1909734/1‑100 (MQ=255)
                                             tttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATg                                                       <  2:1540264/100‑1 (MQ=255)
                                              ttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGc                                                      >  2:333897/1‑100 (MQ=255)
                                               tGGCATTCATTTGATTATTTCGCGGTGATGACACACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTCCACGCATGcc                                                     >  1:2193781/1‑100 (MQ=255)
                                                 gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTc                                                   <  1:1749864/100‑1 (MQ=255)
                                                 gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTc                                                   >  2:690725/1‑100 (MQ=255)
                                                   attcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGc                                                 >  2:1768064/1‑100 (MQ=255)
                                                      cattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTTACGCATGCCTCGCCg                                               >  1:2966224/1‑99 (MQ=255)
                                                      cattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGa                                              >  1:1967590/1‑100 (MQ=255)
                                                      cattTGATTATTTCGCGGTGATGCAAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGc                                                 <  2:899465/97‑1 (MQ=255)
                                                        tttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATg                                            >  2:1012860/1‑100 (MQ=255)
                                                         ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                           >  1:856077/1‑100 (MQ=255)
                                                           gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                         >  1:3072491/1‑100 (MQ=255)
                                                           gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                         >  2:884907/1‑100 (MQ=255)
                                                               attTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAg                                     >  2:803432/1‑100 (MQ=255)
                                                                tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                    <  1:348332/100‑1 (MQ=255)
                                                                tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                    >  2:2382291/1‑100 (MQ=255)
                                                                 ttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcg                                   <  2:959664/100‑1 (MQ=255)
                                                                 ttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcg                                   >  1:3164513/1‑100 (MQ=255)
                                                                  tCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcgc                                  <  2:1967603/100‑1 (MQ=255)
                                                                   cgcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCt                                 >  1:2713756/1‑100 (MQ=255)
                                                                    gcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTc                                >  2:1691761/1‑100 (MQ=255)
                                                                    gcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTc                                >  1:1229974/1‑100 (MQ=255)
                                                                     cgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTcc                               <  2:1328587/100‑1 (MQ=255)
                                                                     cgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTcc                               <  1:1012857/100‑1 (MQ=255)
                                                                      ggTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTccc                              <  1:706157/100‑1 (MQ=255)
                                                                       gTGATGCCAGACGCGTCTTCAGAGTACGCCGGATAAGGCGCTTACGCCGCATCCGACACTATTTTTCACGCATGAATCGCCGATGCCAACAGCGCTCcca                             <  1:1826528/100‑1 (MQ=37)
                                                                       gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                             <  1:2906800/100‑1 (MQ=255)
                                                                       gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                             <  2:2787240/100‑1 (MQ=255)
                                                                        tGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccac                            >  1:2951289/1‑100 (MQ=255)
                                                                         gATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacc                           <  1:1229638/100‑1 (MQ=255)
                                                                          aTGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacca                          <  2:419539/100‑1 (MQ=255)
                                                                           tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                         >  2:1149199/1‑100 (MQ=255)
                                                                            gCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGc                        <  1:333897/100‑1 (MQ=255)
                                                                                  cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                  <  1:752243/100‑1 (MQ=255)
                                                                                  cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                  <  1:1696359/100‑1 (MQ=255)
                                                                                   gcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATACTAACAGCGCTCCCACCAGCATAaaca                 <  1:545187/100‑1 (MQ=255)
                                                                                      tCTTCATATTAAGTCTGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaacaac               <  1:1868495/99‑1 (MQ=255)
                                                                                      tCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg              <  2:1359638/100‑1 (MQ=255)
                                                                                      tCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg              <  2:1359662/100‑1 (MQ=255)
                                                                                        ttCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGTATAAACAACGAg            <  2:2193798/100‑1 (MQ=255)
                                                                                        ttCAGAGTAAGACGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAg            >  1:246723/1‑100 (MQ=255)
                                                                                         tCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGc           >  2:2403579/1‑100 (MQ=255)
                                                                                              gTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaaa      <  2:1156850/100‑1 (MQ=255)
                                                                                                atGTCGGATGCGGCGTAAACGCCTTATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt    <  1:3146698‑M1/98‑1 (MQ=255)
                                                                                                aaGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt    >  2:1853392/1‑100 (MQ=255)
                                                                                                aaGTCGGAGAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt    <  2:1205284/100‑1 (MQ=255)
                                                                                                  GTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt  <  1:1180865‑M1/100‑1 (MQ=255)
                                                                                                  GTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt  >  2:1623237‑M1/1‑100 (MQ=255)
                                                                                                  |                                                                                                   
CTGGCGAAGTGGATTGATGGTTTTGCCGGGGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCT  >  NC_000913/4008303‑4008500

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.