New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4008401 =NA (NA)4 (0.040) 3/164 NT NA noncoding (5/34 nt) REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences REP289 (repetitive extragenic palindromic) element; contains 1 REP sequences
?NC_000913 4008431 = NA (NA)intergenic (+54/+8) rhtC/rhtB threonine efflux pump/homoserine, homoserine lactone and S‑methyl‑methionine efflux pump

Only 100 of 162 total aligned reads displayed.

GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCTT  >  NC_000913/4008332‑4008530
                                                                                                   |                                                                                                   
 gCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACat                                                                                                    <  2:595023/100‑1 (MQ=255)
 attttcggctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatgtcggataaggcgtttacgccgcatccgacat                                                                                                    <  1:3146698‑M2/2‑1 (MQ=255)
  cGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatt                                                                                                   >  1:1359011/1‑100 (MQ=255)
   gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                                                  >  1:2705690/1‑100 (MQ=255)
   gTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACatta                                                                                                  >  1:1597185/1‑100 (MQ=255)
    ttATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACattat                                                                                                 >  2:348332/1‑100 (MQ=255)
       tttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAtttt                                                                                              <  1:1349676/100‑1 (MQ=255)
        ttGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTAttttt                                                                                             <  1:1450876/100‑1 (MQ=255)
         tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                                                            >  1:86794/1‑100 (MQ=255)
         tGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                                                            <  1:1262162/100‑1 (MQ=255)
         ctcgttgtttatgctggtgggagcgctgttagcatcggcgaggcatgcgtgaaaaataatGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTc                                                                                            >  1:479804‑M1/61‑100 (MQ=255)
           ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                                                          <  2:386897/100‑1 (MQ=255)
           ccGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCAc                                                                                          >  2:307050/1‑100 (MQ=255)
            cGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACg                                                                                         <  2:3333983/100‑1 (MQ=255)
              gATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCa                                                                                       <  2:1149402/100‑1 (MQ=255)
                tttGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATg                                                                                     <  2:1540264/100‑1 (MQ=255)
                  tGGCATTCATTTGATTATTTCGCGGTGATGACACACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTCCACGCATGcc                                                                                   >  1:2193781/1‑100 (MQ=255)
                    gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTc                                                                                 <  1:1749864/100‑1 (MQ=255)
                    gCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTc                                                                                 >  2:690725/1‑100 (MQ=255)
                      attcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGc                                                                               >  1:2407908/1‑100 (MQ=255)
                      attcattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGc                                                                               >  2:1768064/1‑100 (MQ=255)
                         cattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTTACGCATGCCTCGCCg                                                                             >  1:2966224/1‑99 (MQ=255)
                         cattTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGa                                                                            >  1:1967590/1‑100 (MQ=255)
                         cattTGATTATTTCGCGGTGATGCAAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGc                                                                               <  2:899465/97‑1 (MQ=255)
                           tttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATg                                                                          <  2:927739/100‑1 (MQ=255)
                            ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGGGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                                                         <  2:2207506/100‑1 (MQ=255)
                            ttGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGc                                                                         <  2:28430/100‑1 (MQ=255)
                              gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                                                       >  1:165318/1‑100 (MQ=255)
                              gATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTa                                                                       >  2:884907/1‑100 (MQ=255)
                                 tattTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACa                                                                    >  2:2416021/1‑100 (MQ=255)
                                  attTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAg                                                                   >  1:2947421/1‑100 (MQ=255)
                                  attTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAg                                                                   >  2:803432/1‑100 (MQ=255)
                                   tttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgc                                                                  >  2:2382291/1‑100 (MQ=255)
                                    ttCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCACATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcg                                                                 >  2:1143491/1‑100 (MQ=255)
                                     taccgGTGATGCAAGAGGCGTCTTTAGAGTACGTCGGATAAGGCGTTTATGACGAATACGGCATTATTATTAATGCATGGCTCGCCGATGATacaaattc                                                                >  1:572393/4‑93 (MQ=255)
                                     tCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAgcgc                                                                <  2:1967603/100‑1 (MQ=255)
                                      cgcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCt                                                               >  2:1364142/1‑100 (MQ=255)
                                       gcgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTc                                                              >  2:1691761/1‑100 (MQ=255)
                                        cgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTcc                                                             <  2:1328587/100‑1 (MQ=255)
                                        cgGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTcc                                                             <  1:1012857/100‑1 (MQ=255)
                                         ggTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTccc                                                            <  1:706157/100‑1 (MQ=255)
                                          gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                                                           <  1:2906800/100‑1 (MQ=255)
                                          gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                                                           <  1:2673774/100‑1 (MQ=255)
                                          gTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCcca                                                           <  2:2787240/100‑1 (MQ=255)
                                           tGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccac                                                          >  1:2951289/1‑100 (MQ=255)
                                            gATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacc                                                         <  1:1229638/100‑1 (MQ=255)
                                             aTGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCccacca                                                        <  2:419539/100‑1 (MQ=255)
                                              tGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAg                                                       >  2:3188661/1‑100 (MQ=255)
                                               gCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGc                                                      <  1:333897/100‑1 (MQ=255)
                                               gCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGc                                                      >  2:1316295/1‑100 (MQ=255)
                                                     cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                                                <  1:1696359/100‑1 (MQ=255)
                                                     cgcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaac                                                <  1:752243/100‑1 (MQ=255)
                                                      gcgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATACTAACAGCGCTCCCACCAGCATAaaca                                               <  1:545187/100‑1 (MQ=255)
                                                       cgTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaacaa                                              >  1:1847609/1‑100 (MQ=255)
                                                         tCTTCATATTAAGTCTGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAaacaac                                             <  1:1868495/99‑1 (MQ=255)
                                                         tCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACg                                            <  2:1359638/100‑1 (MQ=255)
                                                          cTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCCCCCACCAGCATAAACAACGa                                           <  1:2052526/100‑1 (MQ=255)
                                                           ttCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGTATAAACAACGAg                                          <  2:2193798/100‑1 (MQ=255)
                                                           ttCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAg                                          <  1:1205912/100‑1 (MQ=255)
                                                           gaaaaataatgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAg                                          >  1:479804‑M2/41‑100 (MQ=255)
                                                                 gTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGaaa                                    <  2:1156850/100‑1 (MQ=255)
                                                                  tAAGTCGGATAAGGCGTTAACGCCGCAGCAGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCTCCAGCATAAAAAAAGaaaaaaaaa                                   <  1:1178156/100‑9 (MQ=37)
                                                                   atgtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt                                  >  1:2956175‑M2/33‑100 (MQ=255)
                                                                   aaGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAAt                                  >  2:1853392/1‑100 (MQ=255)
                                                                    aGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATc                                 <  1:2744073/100‑1 (MQ=255)
                                                                    aGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATc                                 >  1:3122379/1‑100 (MQ=255)
                                                                     gtcggatgcggcgtaaacgccttatccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt                                >  2:1383483‑M2/31‑100 (MQ=255)
                                                                     GTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt                                >  2:1623237‑M1/1‑100 (MQ=255)
                                                                     GTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCt                                <  1:1180865‑M1/100‑1 (MQ=255)
                                                                      TCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGCTGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCtt                               <  1:1022376‑M1/100‑1 (MQ=255)
                                                                      TCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCtt                               >  1:201354‑M1/1‑100 (MQ=255)
                                                                       CGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTa                              >  2:2407926‑M1/1‑100 (MQ=255)
                                                                        GGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAt                             >  2:3297410‑M1/1‑100 (MQ=255)
                                                                        GGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTAt                             <  2:1827427‑M1/100‑1 (MQ=255)
                                                                          ATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTc                           >  2:1048533‑M1/1‑100 (MQ=255)
                                                                          ATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTc                           >  1:307050‑M1/1‑100 (MQ=255)
                                                                           TAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCCCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCa                          >  1:400707‑M1/1‑100 (MQ=255)
                                                                              ggCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAgcg                       >  2:394155/1‑100 (MQ=255)
                                                                               gCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAgcgc                      <  2:1251182/100‑1 (MQ=255)
                                                                                cGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGcc                     >  2:828742/1‑100 (MQ=255)
                                                                                cGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGcc                     >  1:800276/1‑100 (MQ=255)
                                                                                cGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGcc                     >  1:3307058/1‑100 (MQ=255)
                                                                                cGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGcc                     >  1:2723881/1‑100 (MQ=255)
                                                                                 gTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCt                    <  1:2474674/100‑1 (MQ=255)
                                                                                    tACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCa                 >  2:29840/1‑100 (MQ=255)
                                                                                       gccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCt              >  2:3190872/1‑100 (MQ=255)
                                                                                        ccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGATAATCTTATTCAGCGCCTTCATCTg             <  2:2043989/100‑1 (MQ=255)
                                                                                        ccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTg             <  1:1768053/100‑1 (MQ=255)
                                                                                        ccgcATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTg             <  1:1364138/100‑1 (MQ=255)
                                                                                             tccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTg        >  2:2988461‑M2/7‑100 (MQ=255)
                                                                                             tccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCACAAACCACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTg        >  1:1255348‑M2/7‑100 (MQ=255)
                                                                                              ccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTgg       >  1:2880454‑M2/6‑100 (MQ=255)
                                                                                              ccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTgg       <  1:3190846‑M2/95‑1 (MQ=255)
                                                                                              ccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTgg       <  2:2723904‑M2/95‑1 (MQ=255)
                                                                                              ccgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTgg       <  1:1190521‑M2/95‑1 (MQ=255)
                                                                                               cgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGt      <  1:3174864‑M2/96‑1 (MQ=255)
                                                                                               cgacATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGt      <  1:2132074‑M2/96‑1 (MQ=255)
                                                                                                 acATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTcc    >  1:2498763‑M2/3‑100 (MQ=255)
                                                                                                   attattTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCtt  <  1:3105464/100‑1 (MQ=255)
                                                                                                   attattTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCtt  <  2:974508/100‑1 (MQ=255)
                                                                                                   |                                                                                                   
GGCGTTATTTGCCGGATTTGGCATTCATTTGATTATTTCGCGGTGATGCCAGACGCGTCTTCAGAGTAAGTCGGATAAGGCGTTTACGCCGCATCCGACATTATTTTTCACGCATGCCTCGCCGATGCTAACAGCGCTCCCACCAGCATAAACAACGAGCCGAAAATCTTATTCAGCGCCTTCATCTGCTTTGGTCCTT  >  NC_000913/4008332‑4008530

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.