BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4602757 =	125 (1.010)	7 (0.060)	5/164	NT	6.1%	coding (102/771 nt)	yjjP	DUF1212 family inner membrane protein
*	?	NC_000913	4602785 =	101 (0.890)	7 (0.060)	5/164	NT	6.1%	coding (74/771 nt)	yjjP	DUF1212 family inner membrane protein
Rejected: Frequency below cutoff threshold.

Only 100 of 151 total aligned reads displayed.

TGTCAGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGC  >  NC_000913/4602658‑4602856

 gTCAGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAgg                                                                                                    >  2:2764395/1‑100 (MQ=255)

  tCAGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAgg                                                                                                    <  2:22392/99‑1 (MQ=255)

  tCAGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGa                                                                                                   <  1:599081/100‑1 (MQ=255)

   cgtctatgacaaagggcgagttatgcaaactgagcaacagcgagccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgcGGaa                                                                                                  <  2:201131‑M1/4‑1 (MQ=255)

   cAGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGaa                                                                                                  <  2:1304429/100‑1 (MQ=255)

    gtctatgacaaagggcgagttatgcaaactgagcaacagcgagccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgcGGaaa                                                                                                 <  2:726622‑M1/5‑1 (MQ=255)

    aGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGaaa                                                                                                 <  2:1194829/100‑1 (MQ=255)

     tctatgacaaagggcgagttatgcaaactgagcaacagcgagccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgcGGAAAg                                                                                                >  2:15169‑M1/95‑100 (MQ=255)

     ggCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAg                                                                                                >  1:1068530/1‑100 (MQ=255)

      gCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGc                                                                                               >  2:2128223/1‑100 (MQ=255)

      ctatgacaaagggcgagttatgcaaactgagcaacagcgagccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgcGGAAAGc                                                                                               >  2:3055795‑M1/94‑100 (MQ=255)

           gCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCtcatc                                                                                          <  2:38387/100‑1 (MQ=255)

              cATCTTTAATAGTTGTCATCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATcaac                                                                                       <  1:2781460/100‑1 (MQ=255)

              cATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATcaac                                                                                       <  1:1122421/100‑1 (MQ=255)

               aTCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATcaacc                                                                                      <  1:713031/100‑1 (MQ=255)

               aTCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATcaacc                                                                                      <  2:815405/100‑1 (MQ=255)

                  tttAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCTTGAGGAAAGCTCATcaacca                                                                                     <  1:2044265/98‑1 (MQ=255)

                   ttAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAAcg                                                                                  <  2:1667368/100‑1 (MQ=255)

                    tAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAAcgc                                                                                 <  1:1614292/100‑1 (MQ=255)

                    tAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAAcgc                                                                                 <  2:54551/100‑1 (MQ=255)

                     aaTAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAAcgcg                                                                                >  1:2900552/1‑100 (MQ=255)

                      aTAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACgcgc                                                                               >  2:1317601/1‑100 (MQ=255)

                      aTAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACgcgc                                                                               <  1:1342231/100‑1 (MQ=255)

                        aGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCt                                                                              >  1:593630/1‑99 (MQ=255)

                         gTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCttt                                                                            >  1:201130/1‑100 (MQ=255)

                         gTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCttt                                                                            >  1:641930/1‑100 (MQ=255)

                         gTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCttt                                                                            <  1:1655880/100‑1 (MQ=255)

                           tGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTcc                                                                          <  1:551232/100‑1 (MQ=255)

                           gcaaactgagcaacagcgagccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgaGGAAAGCTCATCAACCAACGCGCTTTcc                                                                          >  2:1790345‑M1/73‑100 (MQ=255)

                            gTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCg                                                                         <  2:111907/100‑1 (MQ=255)

                            caaactgagcaacagcgagccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgcGGAAAGCTCATCAACCAACGCGCTTTCCg                                                                         >  2:1473480‑M1/72‑100 (MQ=255)

                             tCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACgcgcagatcgg                                                                        >  1:1673506/1‑93 (MQ=255)

                             tCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGc                                                                        <  1:810311/100‑1 (MQ=255)

                             tCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGc                                                                        >  1:3276697/1‑100 (MQ=255)

                              cAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCa                                                                       >  2:2906627/1‑100 (MQ=255)

                              cAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCa                                                                       <  2:417880/100‑1 (MQ=255)

                               aGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCAc                                                                      >  1:1584645/1‑100 (MQ=255)

                                gCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCAcc                                                                     <  1:2919775/100‑1 (MQ=255)

                                 cACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCa                                                                    >  2:2944017/1‑100 (MQ=255)

                                   cTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATg                                                                  >  2:1972565/1‑100 (MQ=255)

                                    tATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGt                                                                 >  1:1217388/1‑100 (MQ=255)

                                     aTGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGtt                                                                <  1:11988/100‑1 (MQ=255)

                                      tGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTg                                                               <  1:3014671/100‑1 (MQ=255)

                                       ggCGTTCGAAGAGATAGAACTTTCGTCGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGc                                                              <  1:1907101/100‑1 (MQ=255)

                                        gCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCa                                                             <  2:83149/100‑1 (MQ=255)

                                         cGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCaa                                                            >  2:61972/1‑100 (MQ=255)

                                           ttCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCaaaa                                                          >  1:3184534/1‑100 (MQ=255)

                                             cGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGa                                                        <  2:2779323/100‑1 (MQ=255)

                                             cGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGa                                                        <  2:2542008/100‑1 (MQ=255)

                                             cGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGa                                                        <  2:1217392/100‑1 (MQ=255)

                                             cGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGa                                                        <  2:1482579/100‑1 (MQ=255)

                                             cGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGa                                                        >  2:446518/1‑100 (MQ=255)

                                             agccgtaacacggctttgtatccagtgtggattatttcttttgcaacatggtgcGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGa                                                        >  2:2480081‑M1/55‑100 (MQ=255)

                                              gAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGaa                                                       >  2:363816/1‑100 (MQ=255)

                                              gAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGaa                                                       >  1:2370438/1‑100 (MQ=255)

                                               aaGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGaaa                                                      <  2:3199646/100‑1 (MQ=255)

                                                   gaTAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAaataat                                                  >  2:982057/1‑100 (MQ=255)

                                                    aTAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATc                                                 <  1:2976189/100‑1 (MQ=255)

                                                    aTAGAACTTTCGACGCTGTCCATTCCCAGCGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATc                                                 <  1:2019480/100‑1 (MQ=255)

                                                     tAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATcc                                                <  2:394332/100‑1 (MQ=255)

                                                     tAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATcc                                                <  1:749276/100‑1 (MQ=255)

                                                     tAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATcc                                                >  1:972143/1‑100 (MQ=255)

                                                      aGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATcc                                                <  1:3238270/99‑1 (MQ=255)

                                                       gAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAGCGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCcac                                              <  1:2055959/100‑1 (MQ=255)

                                                         aCTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCacac                                            >  1:1435464/1‑100 (MQ=255)

                                                         aCTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCacac                                            >  1:1435549/1‑100 (MQ=255)

                                                          cTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACt                                           <  2:1545490/100‑1 (MQ=255)

                                                          cTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACt                                           <  1:365533/100‑1 (MQ=255)

                                                              cGACGCTGTCCATTCCCAGTGACCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTACGCACCATGTTGCAAAAGAAATAATCCACACTGGAt                                       >  1:1884308/1‑100 (MQ=255)

                                                                 cGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACa                                    <  2:593630/100‑1 (MQ=255)

                                                                      tCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGcc                               >  1:969069/1‑100 (MQ=255)

                                                                      tCCATTCCCAGTACCCGCCCCAGTCGTGAGGAAAGCTCATCAACGAACGAGCTTTCAGCAGCACGTAGCAAGAGAAATAATCCACACTGGATACaaa                                  >  1:2762779/1‑97 (MQ=255)

                                                                       tctttCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCg                              <  2:112384/97‑1 (MQ=255)

                                                                       ccATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCg                              >  1:2898169/1‑100 (MQ=255)

                                                                       ccATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCg                              <  1:2510369/100‑1 (MQ=255)

                                                                        cATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgt                             >  2:250014/1‑100 (MQ=255)

                                                                         aTTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgtg                            <  2:2325669/100‑1 (MQ=255)

                                                                         aTTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgtg                            <  1:2943991/100‑1 (MQ=255)

                                                                         aTTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgtg                            <  1:1068098/100‑1 (MQ=255)

                                                                          ttCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgtgt                           <  2:1695562/100‑1 (MQ=255)

                                                                          ttCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgaga                           >  1:112383/1‑97 (MQ=255)

                                                                          ttCCCAGTGCCCGACCCAGTCGTGAGAAAAGCTCATCAACCAACGCGATTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCgtgt                           <  2:2304574/100‑1 (MQ=255)

                                                                           tCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGtt                          <  2:969072/100‑1 (MQ=255)

                                                                           tCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGtt                          <  1:535366/100‑1 (MQ=255)

                                                                             ccAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCCCCATGTTGCAAAAGAAATAATCCACACTGGCTACAAAGCCGTGTTAc                        >  2:1218033/1‑100 (MQ=255)

                                                                             ccAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTAc                        <  2:2794746/100‑1 (MQ=255)

                                                                             ccAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTAc                        >  1:421862/1‑100 (MQ=255)

                                                                             ccAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTAc                        >  2:2574845/1‑100 (MQ=255)

                                                                             ccAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTAc                        >  1:2687191/1‑100 (MQ=255)

                                                                              cAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACg                       >  2:1683655/1‑100 (MQ=255)

                                                                                    ccGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGc                 <  2:735538/100‑1 (MQ=255)

                                                                                     cGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCt                <  1:1317597/100‑1 (MQ=255)

                                                                                     cGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCt                <  2:1068533/100‑1 (MQ=255)

                                                                                            gTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTc         <  2:3184560/100‑1 (MQ=255)

                                                                                            gTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTc         >  1:3155516/1‑100 (MQ=255)

                                                                                            gTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTc         <  2:1442621/100‑1 (MQ=255)

                                                                                              cGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAg       >  1:2319903/1‑100 (MQ=255)

                                                                                                   GGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGc  <  2:1743695‑M1/100‑1 (MQ=255)

                                                                                                   GGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGc  <  2:1046683‑M1/100‑1 (MQ=255)

                                                                                                   GGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGc  <  2:976971‑M1/100‑1 (MQ=255)

TGTCAGGCATTGCCCATCTTTAATAGTTGTCAGCACTATGGCGTTCGAAGAGATAGAACTTTCGACGCTGTCCATTCCCAGTGCCCGACCCAGTCGTGAGGAAAGCTCATCAACCAACGCGCTTTCCGCACCATGTTGCAAAAGAAATAATCCACACTGGATACAAAGCCGTGTTACGGCTCGCTGTTGCTCAGTTTGC  >  NC_000913/4602658‑4602856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.