New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4229380 =NA (NA)7 (0.060) 5/164 NT NA noncoding (5/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 4229413 = NA (NA)noncoding (38/70 nt) REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences REP312 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 151 total aligned reads displayed.

AGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGT  >  NC_000913/4229315‑4229512
                                                                                                  |                                                                                                   
gctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCAc                                                                                                    >  1:566892‑M1/66‑100 (MQ=255)
gctggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCAc                                                                                                    >  1:1319826‑M1/66‑100 (MQ=255)
aGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCAc                                                                                                    <  1:1016115/100‑1 (MQ=255)
   ggaagctggtcaccgtttttaagtgaattgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTAt                                                                                                 >  2:1521944‑M1/63‑100 (MQ=255)
    tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATg                                                                                                >  2:1481198/1‑100 (MQ=255)
    tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATg                                                                                                <  2:2300820/100‑1 (MQ=255)
    tgCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATg                                                                                                >  1:2202224/1‑100 (MQ=255)
     gCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTACTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATg                                                                                                >  2:750619/1‑99 (MQ=255)
       gctggtcaccgtttttaagtgaagtgccggatgcatgatccggcatcttgttcatagtGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc                                                                                             >  2:160287‑M1/59‑100 (MQ=255)
        ggAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACa                                                                                            <  2:3208989/100‑1 (MQ=255)
         gAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAAc                                                                                             <  1:542208/98‑1 (MQ=255)
          aaCAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                          >  1:622040/1‑100 (MQ=255)
          aaCAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                          <  1:1552723/100‑1 (MQ=255)
          aaCAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                          >  1:1226304/1‑100 (MQ=255)
          aaCAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAg                                                                                          <  2:2178845/100‑1 (MQ=255)
            cAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGAt                                                                                        <  2:2708603/100‑1 (MQ=255)
              gCCGGATGAAGATGACGGACGGGAGGAGTATTAATATTGTGAATCCTGTAGGCGTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                                                      >  1:1111106/1‑100 (MQ=255)
              gCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGc                                                                                      >  2:249596/1‑100 (MQ=255)
               ccGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGcc                                                                                     <  2:1950493/100‑1 (MQ=255)
                 ggATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCgg                                                                                   >  2:2013427/1‑100 (MQ=255)
                  gatgaagatgaaGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGa                                                                                  <  1:2112715/100‑1 (MQ=255)
                   atgaagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGAt                                                                                 <  1:656491/100‑1 (MQ=255)
                    tgaagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATc                                                                                >  2:2578264/1‑100 (MQ=255)
                    tgaagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATc                                                                                >  2:363356/1‑100 (MQ=255)
                     gaagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCa                                                                               <  1:1691026/100‑1 (MQ=255)
                      aatatgaagTAGTGGACTTGTATTAAGATTTTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCAt                                                                              <  2:614831/97‑1 (MQ=21)
                      aagatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCAt                                                                              <  1:926903/100‑1 (MQ=255)
                       agatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATg                                                                             >  2:3078932/1‑100 (MQ=255)
                       agatgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATg                                                                             <  1:2576702/100‑1 (MQ=255)
                          tgaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCAt                                                                          >  2:1344451/1‑100 (MQ=255)
                           gaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATc                                                                         >  2:1535001/1‑100 (MQ=255)
                           gaagGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATc                                                                         >  1:3058847/1‑100 (MQ=255)
                              ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCGTCCgg                                                                      >  1:2298053/1‑100 (MQ=255)
                              ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCgg                                                                      >  1:957575/1‑100 (MQ=255)
                              ggacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCgg                                                                      >  2:2090749/1‑100 (MQ=255)
                               gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc                                                                     <  2:3167500/100‑1 (MQ=255)
                               gacgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGc                                                                     >  1:1266170/1‑100 (MQ=255)
                                 cgggacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCaa                                                                   >  2:942961/1‑100 (MQ=255)
                                 cggaacgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCaa                                                                   <  2:1365681/100‑1 (MQ=255)
                                     acgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCATGCACTATGAACAAGATGCCTGATCATGCATCCGGCAATTc                                                                <  1:683609/99‑1 (MQ=255)
                                      cgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAc                                                              <  1:1186904/100‑1 (MQ=255)
                                      cgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAc                                                              <  1:1192066/100‑1 (MQ=255)
                                      cgAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCAc                                                              <  2:2281224/100‑1 (MQ=255)
                                           aTTAAGAGTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaa                                                          <  1:2559916/99‑1 (MQ=255)
                                            ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCNTCAGNCANTATGNACANGATGCCGGATCATGCATCCGGCAATTCACTTaan                                                         <  2:1322280/99‑2 (MQ=255)
                                            ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaa                                                        >  2:1141961/1‑100 (MQ=255)
                                            ttAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTAACTTaaaa                                                        >  1:3072095/1‑100 (MQ=255)
                                             tAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTaaaaa                                                       >  1:1876127/1‑100 (MQ=255)
                                              aaTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGTATCCGGCAATTCACTTAAAAAc                                                      >  2:1671846/1‑100 (MQ=255)
                                              aaTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAAc                                                      <  1:736136/100‑1 (MQ=255)
                                              aaTATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAAc                                                      >  1:1642128/1‑100 (MQ=255)
                                               atatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGCTGCCGGATCATGCATCCGGCAATTCACTTAAAAACg                                                     >  1:1662677/1‑100 (MQ=255)
                                                tatTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACgg                                                    >  2:1309174/1‑100 (MQ=255)
                                                  ttGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCTTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACgg                                                    <  1:888216/98‑1 (MQ=255)
                                                  ttGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTg                                                  <  2:622040/100‑1 (MQ=255)
                                                  ttGTGAATCCTGTAGGCCTGAGAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTg                                                  <  1:2726179/100‑1 (MQ=255)
                                                    gtgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAc                                                >  2:1708304/1‑100 (MQ=255)
                                                     tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAcc                                               <  1:363356/100‑1 (MQ=255)
                                                     tgAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGAcc                                               <  1:2607596/100‑1 (MQ=255)
                                                      gAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCa                                              >  2:150778/1‑100 (MQ=255)
                                                           cTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTc                                         <  2:1808291/100‑1 (MQ=255)
                                                            tGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGCTCATGCACCCGGCAATTCACTTAAAAACGGTGACCAGCTTcc                                        >  1:2102584/1‑100 (MQ=255)
                                                            tGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTcc                                        <  2:1642135/100‑1 (MQ=255)
                                                            atagtgcctgatgcgacgcttgacgcgtcttatcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTcc                                        >  2:1521944‑M2/39‑100 (MQ=255)
                                                             gTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCa                                       >  2:2186516/1‑100 (MQ=255)
                                                               gtgcctgatgcgacgcttgacgcgtcttatcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc                                     >  1:566892‑M2/36‑100 (MQ=255)
                                                               gtgcctgatgcgacgcttgacgcgtcttatcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGc                                     >  1:1319826‑M2/36‑100 (MQ=255)
                                                                ggCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCg                                    <  2:1222595/100‑1 (MQ=255)
                                                                 gcctgatgcgacgcttgacgcgtcttatcgggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCgg                                   >  2:2201680‑M2/34‑100 (MQ=255)
                                                                  CCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa                                  <  2:2416919‑M1/100‑1 (MQ=255)
                                                                    TGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAAc                                <  1:1917853‑M1/100‑1 (MQ=255)
                                                                     GATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGa                                  <  2:1046105‑M1/97‑1 (MQ=255)
                                                                       TAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGc                             <  2:2433744‑M1/100‑1 (MQ=255)
                                                                        aaGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGct                            >  2:2981514/1‑100 (MQ=255)
                                                                        aaGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGct                            >  1:3072134/1‑100 (MQ=255)
                                                                           aCGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttct                         <  1:2536129/100‑1 (MQ=255)
                                                                           aCGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttct                         <  1:2315862/100‑1 (MQ=255)
                                                                           aCGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCAGAACCGcttct                         <  1:1747244/100‑1 (MQ=255)
                                                                           aCGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCAGAACCGcttct                         <  1:1743033/100‑1 (MQ=255)
                                                                            cgcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGcttctt                        <  2:2908284/100‑1 (MQ=255)
                                                                             gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCttcttc                       <  1:1696478/100‑1 (MQ=255)
                                                                             gcgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCttcttc                       <  2:2120036/100‑1 (MQ=255)
                                                                              cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCa                      <  1:1514389/100‑1 (MQ=255)
                                                                              cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCa                      <  1:1514361/100‑1 (MQ=255)
                                                                              cgTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCa                      >  2:2184582/1‑100 (MQ=255)
                                                                                tcgaGCGTCGCATCAGGCACCATGAACAAGCCGCCGGATCATTCCTCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCAcc                    <  2:2777333/97‑1 (MQ=255)
                                                                                 cAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCa                   >  1:2703257/1‑100 (MQ=255)
                                                                                  aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAg                  <  1:2186499/100‑1 (MQ=255)
                                                                                  aaGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAg                  >  2:335909/1‑100 (MQ=255)
                                                                                   aGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGc                 >  1:2975845/1‑100 (MQ=255)
                                                                                       tCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCATTTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa             <  2:1835111/100‑1 (MQ=255)
                                                                                       tCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTa             <  1:1612845/100‑1 (MQ=255)
                                                                                          cATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTaaa           <  2:1918065/99‑1 (MQ=255)
                                                                                          cATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac          <  2:1226308/100‑1 (MQ=255)
                                                                                          cATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac          >  2:1714573/1‑100 (MQ=255)
                                                                                          cATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAac          <  1:335909/100‑1 (MQ=255)
                                                                                            tcaggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAacac        >  1:53694‑M2/7‑100 (MQ=255)
                                                                                              aggcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACAt      <  2:205935‑M2/96‑1 (MQ=255)
                                                                                                gcACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATaa    >  2:2875633‑M2/3‑100 (MQ=255)
                                                                                                  aCTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAgt  <  2:732005/100‑1 (MQ=255)
                                                                                                  |                                                                                                   
AGTGTGCTGGAACAGCCGGATGAAGATGAAGGACGGGACGAGTATTAATATTGTGAATCCTGTAGGCCTGATAAGACGCGTCAAGCGTCGCATCAGGCACTATGAACAAGATGCCGGATCATGCATCCGGCAATTCACTTAAAAACGGTGACCAGCTTCCAGCGGAACCGCTTCTTCACCAGCCTTAAACACATAAGT  >  NC_000913/4229315‑4229512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.