mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.27.1 revision 87c22d663cc3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,781,140 | 0 | A | G | 31.2% | 67.7 / 24.7 | 49 | intergenic (+123/‑75) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| * | NC_000913 | 4,296,060 | 0 | C | T | 30.4% | 174.5 / 79.4 | 102 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913 | 3,781,152 | 0 | A | G | 27.9% | 99.2 / 26.6 | 61 | intergenic (+135/‑63) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Marginal new junction evidence (lowest skew 10 of 53 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 2430982 = | 52 (0.770) | 7 (0.160) +36 bp |
4/126 | 5.3 | 14.9% | noncoding (54/84 nt) | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP169 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 2304953 | NA (NA) | 7 (0.160) +36 bp |
4/126 | 5.3 | 13.0% | noncoding (537/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 2304840 | 55 (0.810) | 7 (0.160) +36 bp |
4/126 | 5.3 | 14.6% | noncoding (424/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 2304614 | NA (NA) | 7 (0.160) +36 bp |
4/126 | 5.3 | 13.0% | noncoding (198/655 nt) | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences | REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | 3313196 = | 74 (1.090) | 7 (0.160) +36 bp |
3/126 | 5.9 | 13.2% | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 |
| ? | NC_000913 | = 4027548 | 71 (1.050) | noncoding (227/281 nt) | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP291 (repetitive extragenic palindromic) element; contains 6 REP sequences | |||||
| * | ? | NC_000913 | = 3042470 | NA (NA) | 7 (0.160) +36 bp |
3/126 | 5.9 | 13.0% | noncoding (150/155 nt) | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP210 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | 2347297 = | 82 (1.210) | 7 (0.160) +36 bp |
3/126 | 5.9 | 12.4% | noncoding (138/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | 2347209 = | NA (NA) | 5 (0.120) +36 bp |
3/126 | 5.9 | 9.6% | noncoding (50/203 nt) | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences | REP164 (repetitive extragenic palindromic) element; contains 5 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | = 111507 | 71 (1.050) | 7 (0.160) +36 bp |
3/126 | 5.9 | 13.2% | noncoding (78/200 nt) | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site | RIP8 (repetitive extragenic palindromic) element; contains 4 REP sequences and 1 IHF site |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||
| * | ? | NC_000913 | 66697 = | 79 (1.160) | 5 (0.120) +36 bp |
3/126 | 5.9 | 9.4% | noncoding (133/248 nt) | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences | REP6 (repetitive extragenic palindromic) element; contains 6 REP sequences |
| ? | NC_000913 | 3313196 = | 74 (1.090) | intergenic (‑18/+146) | rbfA/infB | 30s ribosome binding factor/translation initiation factor IF‑2 | |||||